Literature DB >> 22281773

Developing predictive molecular maps of human disease through community-based modeling.

Jonathan M J Derry1, Lara M Mangravite, Christine Suver, Matthew D Furia, David Henderson, Xavier Schildwachter, Brian Bot, Jonathan Izant, Solveig K Sieberts, Michael R Kellen, Stephen H Friend.   

Abstract

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Year:  2012        PMID： 22281773      PMCID： PMC3643818          DOI： 10.1038/ng.1089

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  19 in total

Review 1.  Network biology: understanding the cell's functional organization.

Authors:  Albert-László Barabási; Zoltán N Oltvai
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

Review 2.  Can the pharmaceutical industry reduce attrition rates?

Authors:  Ismail Kola; John Landis
Journal:  Nat Rev Drug Discov       Date:  2004-08       Impact factor: 84.694

Review 3.  The need for precompetitive integrative bionetwork disease model building.

Authors:  S H Friend
Journal:  Clin Pharmacol Ther       Date:  2010-05       Impact factor: 6.875

4.  Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach.

Authors:  Belinda Giardine; Joseph Borg; Douglas R Higgs; Kenneth R Peterson; Sjaak Philipsen; Donna Maglott; Belinda K Singleton; David J Anstee; A Nazli Basak; Barnaby Clark; Flavia C Costa; Paula Faustino; Halyna Fedosyuk; Alex E Felice; Alain Francina; Renzo Galanello; Monica V E Gallivan; Marianthi Georgitsi; Richard J Gibbons; Piero C Giordano; Cornelis L Harteveld; James D Hoyer; Martin Jarvis; Philippe Joly; Emmanuel Kanavakis; Panagoula Kollia; Stephan Menzel; Webb Miller; Kamran Moradkhani; John Old; Adamantia Papachatzopoulou; Manoussos N Papadakis; Petros Papadopoulos; Sonja Pavlovic; Lucia Perseu; Milena Radmilovic; Cathy Riemer; Stefania Satta; Iris Schrijver; Maja Stojiljkovic; Swee Lay Thein; Jan Traeger-Synodinos; Ray Tully; Takahito Wada; John S Waye; Claudia Wiemann; Branka Zukic; David H K Chui; Henri Wajcman; Ross C Hardison; George P Patrinos
Journal:  Nat Genet       Date:  2011-03-20       Impact factor: 38.330

Review 5.  A network view of disease and compound screening.

Authors:  Eric E Schadt; Stephen H Friend; David A Shaywitz
Journal:  Nat Rev Drug Discov       Date:  2009-04       Impact factor: 84.694

6.  Computer science. Accessible reproducible research.

Authors:  Jill P Mesirov
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

7.  Data's shameful neglect.

Authors: 
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

8.  Electronic consent channels: preserving patient privacy without handcuffing researchers.

Authors:  Robert H Shelton
Journal:  Sci Transl Med       Date:  2011-02-09       Impact factor: 17.956

9.  Post-publication sharing of data and tools.

Authors:  Paul N Schofield; Tania Bubela; Thomas Weaver; Lili Portilla; Stephen D Brown; John M Hancock; David Einhorn; Glauco Tocchini-Valentini; Martin Hrabe de Angelis; Nadia Rosenthal
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

10.  Computational disease modeling - fact or fiction?

Authors:  Jesper N Tegnér; Albert Compte; Charles Auffray; Gary An; Gunnar Cedersund; Gilles Clermont; Boris Gutkin; Zoltán N Oltvai; Klaas Enno Stephan; Randy Thomas; Pablo Villoslada
Journal:  BMC Syst Biol       Date:  2009-06-04
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  35 in total

Review 1.  Molecular pathology of cutaneous melanoma.

Authors:  Léon C van Kempen; Margaret Redpath; Caroline Robert; Alan Spatz
Journal:  Melanoma Manag       Date:  2014-12-04

Review 2.  Perspectives on systems biology applications in diabetic kidney disease.

Authors:  Claudiu V Komorowsky; Frank C Brosius; Subramaniam Pennathur; Matthias Kretzler
Journal:  J Cardiovasc Transl Res       Date:  2012-06-26       Impact factor: 4.132

Review 3.  Harnessing Big Data for Systems Pharmacology.

Authors:  Lei Xie; Eli J Draizen; Philip E Bourne
Journal:  Annu Rev Pharmacol Toxicol       Date:  2016-10-13       Impact factor: 13.820

4.  Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases.

Authors:  Daniel Marbach; David Lamparter; Gerald Quon; Manolis Kellis; Zoltán Kutalik; Sven Bergmann
Journal:  Nat Methods       Date:  2016-03-07       Impact factor: 28.547

5.  Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer.

Authors:  Adam A Margolin; Erhan Bilal; Erich Huang; Thea C Norman; Lars Ottestad; Brigham H Mecham; Ben Sauerwine; Michael R Kellen; Lara M Mangravite; Matthew D Furia; Hans Kristian Moen Vollan; Oscar M Rueda; Justin Guinney; Nicole A Deflaux; Bruce Hoff; Xavier Schildwachter; Hege G Russnes; Daehoon Park; Veronica O Vang; Tyler Pirtle; Lamia Youseff; Craig Citro; Christina Curtis; Vessela N Kristensen; Joseph Hellerstein; Stephen H Friend; Gustavo Stolovitzky; Samuel Aparicio; Carlos Caldas; Anne-Lise Børresen-Dale
Journal:  Sci Transl Med       Date:  2013-04-17       Impact factor: 17.956

Review 6.  Identifying disease mutations in genomic medicine settings: current challenges and how to accelerate progress.

Authors:  Gholson J Lyon; Kai Wang
Journal:  Genome Med       Date:  2012-07-26       Impact factor: 11.117

Review 7.  Cancer Systems Biology: a peek into the future of patient care?

Authors:  Henrica M J Werner; Gordon B Mills; Prahlad T Ram
Journal:  Nat Rev Clin Oncol       Date:  2014-02-04       Impact factor: 66.675

8.  Personalized medicine: challenges and opportunities for translational bioinformatics.

Authors:  Casey Lynnette Overby; Peter Tarczy-Hornoch
Journal:  Per Med       Date:  2013-07-01       Impact factor: 2.512

9.  AACR Project GENIE: Powering Precision Medicine through an International Consortium.

Authors: 
Journal:  Cancer Discov       Date:  2017-06-01       Impact factor: 39.397

Review 10.  Impact of bioinformatic procedures in the development and translation of high-throughput molecular classifiers in oncology.

Authors:  Charles Ferté; Andrew D Trister; Erich Huang; Brian M Bot; Justin Guinney; Frederic Commo; Solveig Sieberts; Fabrice André; Benjamin Besse; Jean-Charles Soria; Stephen H Friend
Journal:  Clin Cancer Res       Date:  2013-06-18       Impact factor: 12.531
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