Literature DB >> 19337271

A network view of disease and compound screening.

Eric E Schadt1, Stephen H Friend, David A Shaywitz.   

Abstract

The large-scale generation and integration of genomic, proteomic, signalling and metabolomic data are increasingly allowing the construction of complex networks that provide a new framework for understanding the molecular basis of physiological or pathophysiological states. Network-based drug discovery aims to harness this knowledge to investigate and understand the impact of interventions, such as candidate drugs, on the molecular networks that define these states. In this article, we describe how such an approach offers a novel way to understand biology, characterize disease and ultimately develop improved therapies, and discuss the challenges to realizing these goals.

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Year:  2009        PMID: 19337271     DOI: 10.1038/nrd2826

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  60 in total

1.  Functional discovery via a compendium of expression profiles.

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Journal:  Cell       Date:  2000-07-07       Impact factor: 41.582

Review 2.  Network biology: understanding the cell's functional organization.

Authors:  Albert-László Barabási; Zoltán N Oltvai
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

3.  Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits.

Authors:  Margarete Mehrabian; Hooman Allayee; Jirina Stockton; Pek Yee Lum; Thomas A Drake; Lawrence W Castellani; Michael Suh; Christopher Armour; Stephen Edwards; John Lamb; Aldons J Lusis; Eric E Schadt
Journal:  Nat Genet       Date:  2005-10-02       Impact factor: 38.330

4.  An integrative genomics approach to infer causal associations between gene expression and disease.

Authors:  Eric E Schadt; John Lamb; Xia Yang; Jun Zhu; Steve Edwards; Debraj Guhathakurta; Solveig K Sieberts; Stephanie Monks; Marc Reitman; Chunsheng Zhang; Pek Yee Lum; Amy Leonardson; Rolf Thieringer; Joseph M Metzger; Liming Yang; John Castle; Haoyuan Zhu; Shera F Kash; Thomas A Drake; Alan Sachs; Aldons J Lusis
Journal:  Nat Genet       Date:  2005-06-19       Impact factor: 38.330

5.  A genome-wide association study of global gene expression.

Authors:  Anna L Dixon; Liming Liang; Miriam F Moffatt; Wei Chen; Simon Heath; Kenny C C Wong; Jenny Taylor; Edward Burnett; Ivo Gut; Martin Farrall; G Mark Lathrop; Gonçalo R Abecasis; William O C Cookson
Journal:  Nat Genet       Date:  2007-09-16       Impact factor: 38.330

Review 6.  A systems biology approach to drug discovery.

Authors:  Jun Zhu; Bin Zhang; Eric E Schadt
Journal:  Adv Genet       Date:  2008       Impact factor: 1.944

7.  Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

Authors:  Leonid Bystrykh; Ellen Weersing; Bert Dontje; Sue Sutton; Mathew T Pletcher; Tim Wiltshire; Andrew I Su; Edo Vellenga; Jintao Wang; Kenneth F Manly; Lu Lu; Elissa J Chesler; Rudi Alberts; Ritsert C Jansen; Robert W Williams; Michael P Cooke; Gerald de Haan
Journal:  Nat Genet       Date:  2005-02-13       Impact factor: 38.330

8.  Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.

Authors:  Sekar Kathiresan; Olle Melander; Candace Guiducci; Aarti Surti; Noël P Burtt; Mark J Rieder; Gregory M Cooper; Charlotta Roos; Benjamin F Voight; Aki S Havulinna; Björn Wahlstrand; Thomas Hedner; Dolores Corella; E Shyong Tai; Jose M Ordovas; Göran Berglund; Erkki Vartiainen; Pekka Jousilahti; Bo Hedblad; Marja-Riitta Taskinen; Christopher Newton-Cheh; Veikko Salomaa; Leena Peltonen; Leif Groop; David M Altshuler; Marju Orho-Melander
Journal:  Nat Genet       Date:  2008-01-13       Impact factor: 38.330

9.  Newly identified loci that influence lipid concentrations and risk of coronary artery disease.

Authors:  Cristen J Willer; Serena Sanna; Anne U Jackson; Angelo Scuteri; Lori L Bonnycastle; Robert Clarke; Simon C Heath; Nicholas J Timpson; Samer S Najjar; Heather M Stringham; James Strait; William L Duren; Andrea Maschio; Fabio Busonero; Antonella Mulas; Giuseppe Albai; Amy J Swift; Mario A Morken; Narisu Narisu; Derrick Bennett; Sarah Parish; Haiqing Shen; Pilar Galan; Pierre Meneton; Serge Hercberg; Diana Zelenika; Wei-Min Chen; Yun Li; Laura J Scott; Paul A Scheet; Jouko Sundvall; Richard M Watanabe; Ramaiah Nagaraja; Shah Ebrahim; Debbie A Lawlor; Yoav Ben-Shlomo; George Davey-Smith; Alan R Shuldiner; Rory Collins; Richard N Bergman; Manuela Uda; Jaakko Tuomilehto; Antonio Cao; Francis S Collins; Edward Lakatta; G Mark Lathrop; Michael Boehnke; David Schlessinger; Karen L Mohlke; Gonçalo R Abecasis
Journal:  Nat Genet       Date:  2008-01-13       Impact factor: 38.330

10.  Genetic and genomic analysis of a fat mass trait with complex inheritance reveals marked sex specificity.

Authors:  Susanna Wang; Nadir Yehya; Eric E Schadt; Hui Wang; Thomas A Drake; Aldons J Lusis
Journal:  PLoS Genet       Date:  2006-02-03       Impact factor: 5.917

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  112 in total

Review 1.  Software for systems biology: from tools to integrated platforms.

Authors:  Samik Ghosh; Yukiko Matsuoka; Yoshiyuki Asai; Kun-Yi Hsin; Hiroaki Kitano
Journal:  Nat Rev Genet       Date:  2011-11-03       Impact factor: 53.242

2.  Genetic variation in the Yolk protein expression network of Drosophila melanogaster: sex-biased negative correlations with longevity.

Authors:  A M Tarone; L M McIntyre; L G Harshman; S V Nuzhdin
Journal:  Heredity (Edinb)       Date:  2012-07-04       Impact factor: 3.821

Review 3.  Integrative systems biology and networks in autophagy.

Authors:  Aylwin C Y Ng
Journal:  Semin Immunopathol       Date:  2010-09-15       Impact factor: 9.623

4.  Drug discovery in a multidimensional world: systems, patterns, and networks.

Authors:  Joel T Dudley; Eric Schadt; Marina Sirota; Atul J Butte; Euan Ashley
Journal:  J Cardiovasc Transl Res       Date:  2010-07-31       Impact factor: 4.132

Review 5.  Envisioning the future of early anticancer drug development.

Authors:  Timothy A Yap; Shahneen K Sandhu; Paul Workman; Johann S de Bono
Journal:  Nat Rev Cancer       Date:  2010-06-10       Impact factor: 60.716

Review 6.  The genetics of multiple sclerosis: an up-to-date review.

Authors:  Pierre-Antoine Gourraud; Hanne F Harbo; Stephen L Hauser; Sergio E Baranzini
Journal:  Immunol Rev       Date:  2012-07       Impact factor: 12.988

Review 7.  Methods for biological data integration: perspectives and challenges.

Authors:  Vladimir Gligorijević; Nataša Pržulj
Journal:  J R Soc Interface       Date:  2015-11-06       Impact factor: 4.118

Review 8.  Accelerating Adverse Outcome Pathway Development Using Publicly Available Data Sources.

Authors:  Noffisat O Oki; Mark D Nelms; Shannon M Bell; Holly M Mortensen; Stephen W Edwards
Journal:  Curr Environ Health Rep       Date:  2016-03

9.  Heart beats in the cloud: distributed analysis of electrophysiological 'Big Data' using cloud computing for epilepsy clinical research.

Authors:  Satya S Sahoo; Catherine Jayapandian; Gaurav Garg; Farhad Kaffashi; Stephanie Chung; Alireza Bozorgi; Chien-Hun Chen; Kenneth Loparo; Samden D Lhatoo; Guo-Qiang Zhang
Journal:  J Am Med Inform Assoc       Date:  2013-12-10       Impact factor: 4.497

10.  Interaction network among functional drug groups.

Authors:  Minho Lee; Keunwan Park; Dongsup Kim
Journal:  BMC Syst Biol       Date:  2013-10-16
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