Literature DB >> 24492837

Cancer Systems Biology: a peek into the future of patient care?

Henrica M J Werner1, Gordon B Mills2, Prahlad T Ram2.   

Abstract

Traditionally, scientific research has focused on studying individual events, such as single mutations, gene function, or the effect that mutating one protein has on a biological phenotype. A range of technologies is beginning to provide information that will enable a holistic view of how genomic and epigenetic aberrations in cancer cells can alter the homeostasis of signalling networks within these cells, between cancer cells and the local microenvironment, and at the organ and organism level. This process, termed Systems Biology, needs to be integrated with an iterative approach wherein hypotheses and predictions that arise from modelling are refined and constrained by experimental evaluation. Systems biology approaches will be vital for developing and implementing effective strategies to deliver personalized cancer therapy. Specifically, these approaches will be important to select those patients who are most likely to benefit from targeted therapies and for the development and implementation of rational combinatorial therapies. Systems biology can help to increase therapy efficacy or bypass the emergence of resistance, thus converting the current-often short term-effects of targeted therapies into durable responses, ultimately to improve patient quality of life and provide a cure.

Entities:  

Mesh:

Year:  2014        PMID: 24492837      PMCID: PMC4321721          DOI: 10.1038/nrclinonc.2014.6

Source DB:  PubMed          Journal:  Nat Rev Clin Oncol        ISSN: 1759-4774            Impact factor:   66.675


  100 in total

Review 1.  EMT, cancer stem cells and drug resistance: an emerging axis of evil in the war on cancer.

Authors:  A Singh; J Settleman
Journal:  Oncogene       Date:  2010-06-07       Impact factor: 9.867

2.  Leveraging crowdsourcing to facilitate the discovery of new medicines.

Authors:  Thea C Norman; Chas Bountra; Aled M Edwards; Keith R Yamamoto; Stephen H Friend
Journal:  Sci Transl Med       Date:  2011-06-22       Impact factor: 17.956

3.  Cross-species hybridization of microarrays for studying tumor transcriptome of brain metastasis.

Authors:  Eun Sung Park; Sun Jin Kim; Seung Wook Kim; Se-Lyun Yoon; Sun-Hee Leem; Sang-Bae Kim; Soo Mi Kim; Yun-Yong Park; Jae-Ho Cheong; Hyun Goo Woo; Gordon B Mills; Isaiah J Fidler; Ju-Seog Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

4.  A colorectal cancer classification system that associates cellular phenotype and responses to therapy.

Authors:  Anguraj Sadanandam; Costas A Lyssiotis; Krisztian Homicsko; Eric A Collisson; William J Gibb; Stephan Wullschleger; Liliane C Gonzalez Ostos; William A Lannon; Carsten Grotzinger; Maguy Del Rio; Benoit Lhermitte; Adam B Olshen; Bertram Wiedenmann; Lewis C Cantley; Joe W Gray; Douglas Hanahan
Journal:  Nat Med       Date:  2013-04-14       Impact factor: 53.440

5.  Drug off-target effects predicted using structural analysis in the context of a metabolic network model.

Authors:  Roger L Chang; Li Xie; Lei Xie; Philip E Bourne; Bernhard Ø Palsson
Journal:  PLoS Comput Biol       Date:  2010-09-23       Impact factor: 4.475

6.  Stromal gene expression predicts clinical outcome in breast cancer.

Authors:  Greg Finak; Nicholas Bertos; Francois Pepin; Svetlana Sadekova; Margarita Souleimanova; Hong Zhao; Haiying Chen; Gulbeyaz Omeroglu; Sarkis Meterissian; Atilla Omeroglu; Michael Hallett; Morag Park
Journal:  Nat Med       Date:  2008-04-27       Impact factor: 53.440

7.  Cross-talk between integrins and oncogenes modulates chemosensitivity.

Authors:  Jordi Carreras Puigvert; Stephan Huveneers; Lisa Fredriksson; Marieke op het Veld; Bob van de Water; Erik H J Danen
Journal:  Mol Pharmacol       Date:  2009-01-21       Impact factor: 4.436

8.  Computational modeling of ERBB2-amplified breast cancer identifies combined ErbB2/3 blockade as superior to the combination of MEK and AKT inhibitors.

Authors:  Daniel C Kirouac; Jin Y Du; Johanna Lahdenranta; Ryan Overland; Defne Yarar; Violette Paragas; Emily Pace; Charlotte F McDonagh; Ulrik B Nielsen; Matthew D Onsum
Journal:  Sci Signal       Date:  2013-08-13       Impact factor: 8.192

9.  Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks.

Authors:  Michael J Lee; Albert S Ye; Alexandra K Gardino; Anne Margriet Heijink; Peter K Sorger; Gavin MacBeath; Michael B Yaffe
Journal:  Cell       Date:  2012-05-11       Impact factor: 41.582

10.  Models from experiments: combinatorial drug perturbations of cancer cells.

Authors:  Sven Nelander; Weiqing Wang; Björn Nilsson; Qing-Bai She; Christine Pratilas; Neal Rosen; Peter Gennemark; Chris Sander
Journal:  Mol Syst Biol       Date:  2008-09-02       Impact factor: 11.429

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  67 in total

Review 1.  Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers.

Authors:  Robert Clarke; John J Tyson; Ming Tan; William T Baumann; Lu Jin; Jianhua Xuan; Yue Wang
Journal:  Endocr Relat Cancer       Date:  2019-06       Impact factor: 5.678

2.  Untargeted Tumor Metabolomics with Liquid Chromatography-Surface-Enhanced Raman Spectroscopy.

Authors:  Lifu Xiao; Chuanqi Wang; Chen Dai; Laurie E Littlepage; Jun Li; Zachary D Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2020-01-27       Impact factor: 15.336

Review 3.  Current status of molecular biomarkers in endometrial cancer.

Authors:  H M J Werner; H B Salvesen
Journal:  Curr Oncol Rep       Date:  2014-09       Impact factor: 5.075

4.  Biomaterial science meets computational biology.

Authors:  Dietmar W Hutmacher; J Paige Little; Graeme J Pettet; Daniela Loessner
Journal:  J Mater Sci Mater Med       Date:  2015-04-18       Impact factor: 3.896

Review 5.  Epidrugs: targeting epigenetic marks in cancer treatment.

Authors:  Cristiana Libardi Miranda Furtado; Maria Claudia Dos Santos Luciano; Renan Da Silva Santos; Gilvan Pessoa Furtado; Manoel Odorico Moraes; Claudia Pessoa
Journal:  Epigenetics       Date:  2019-07-13       Impact factor: 4.528

6.  Precision medicine and molecular imaging: new targeted approaches toward cancer therapeutic and diagnosis.

Authors:  Mojtaba Ghasemi; Iraj Nabipour; Abdolmajid Omrani; Zeinab Alipour; Majid Assadi
Journal:  Am J Nucl Med Mol Imaging       Date:  2016-11-30

7.  Crosstalk between SHH and stemness state signaling pathways in esophageal squamous cell carcinoma.

Authors:  Maryam Najafi; Mohammad Reza Abbaszadegan; Abolfazl Rad; Mahtab Dastpak; Samaneh Boroumand-Noughabi; Mohammad Mahdi Forghanifard
Journal:  J Cell Commun Signal       Date:  2016-11-30       Impact factor: 5.782

8.  Implementation of systems theory in liver cancer research.

Authors:  Federico Pinna; Kai Breuhahn
Journal:  Hepat Oncol       Date:  2015-01-12

9.  Single-Cell RNA Sequencing of Ovarian Cancer: Promises and Challenges.

Authors:  Shobhana Talukdar; Zenas Chang; Boris Winterhoff; Timothy K Starr
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 10.  Heterogeneity of glycolysis in cancers and therapeutic opportunities.

Authors:  Marc O Warmoes; Jason W Locasale
Journal:  Biochem Pharmacol       Date:  2014-08-02       Impact factor: 5.858

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