Literature DB >> 24039624

Personalized medicine: challenges and opportunities for translational bioinformatics.

Casey Lynnette Overby1, Peter Tarczy-Hornoch.   

Abstract

Personalized medicine can be defined broadly as a model of healthcare that is predictive, personalized, preventive and participatory. Two US President's Council of Advisors on Science and Technology reports illustrate challenges in personalized medicine (in a 2008 report) and in use of health information technology (in a 2010 report). Translational bioinformatics is a field that can help address these challenges and is defined by the American Medical Informatics Association as "the development of storage, analytic and interpretive methods to optimize the transformation of increasing voluminous biomedical data into proactive, predictive, preventative and participatory health." This article discusses barriers to implementing genomics applications and current progress toward overcoming barriers, describes lessons learned from early experiences of institutions engaged in personalized medicine and provides example areas for translational bioinformatics research inquiry.

Entities:  

Keywords:  biobanks; clinical decision support; computational analyses; education; electronic health records; implementation challenges; individual research results; personalized medicine; translational bioinformatics; translational research

Year:  2013        PMID: 24039624      PMCID: PMC3770190          DOI: 10.2217/pme.13.30

Source DB:  PubMed          Journal:  Per Med        ISSN: 1741-0541            Impact factor:   2.512


  63 in total

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Review 2.  Personalized health care: from theory to practice.

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Journal:  Biotechnol J       Date:  2011-12-16       Impact factor: 4.677

3.  Clinical decision support in electronic prescribing: recommendations and an action plan: report of the joint clinical decision support workgroup.

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4.  Bio*Medical Informatics and Genomic Medicine: Research and Training.

Authors: 
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5.  Synthesis of pharmacokinetic pathways through knowledge acquisition and automated reasoning.

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Journal:  Pac Symp Biocomput       Date:  2010

6.  Implementations of the HL7 Context-Aware Knowledge Retrieval ("Infobutton") Standard: challenges, strengths, limitations, and uptake.

Authors:  Guilherme Del Fiol; Vojtech Huser; Howard R Strasberg; Saverio M Maviglia; Clayton Curtis; James J Cimino
Journal:  J Biomed Inform       Date:  2012-01-02       Impact factor: 6.317

7.  The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies.

Authors:  Catherine A McCarty; Rex L Chisholm; Christopher G Chute; Iftikhar J Kullo; Gail P Jarvik; Eric B Larson; Rongling Li; Daniel R Masys; Marylyn D Ritchie; Dan M Roden; Jeffery P Struewing; Wendy A Wolf
Journal:  BMC Med Genomics       Date:  2011-01-26       Impact factor: 3.063

Review 8.  Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.

Authors:  Elmer V Bernstam; William R Hersh; Stephen B Johnson; Christopher G Chute; Hien Nguyen; Ida Sim; Meredith Nahm; Mark G Weiner; Perry Miller; Robert P DiLaura; Marc Overcash; Harold P Lehmann; David Eichmann; Brian D Athey; Richard H Scheuermann; Nick Anderson; Justin Starren; Paul A Harris; Jack W Smith; Ed Barbour; Jonathan C Silverstein; David A Krusch; Rakesh Nagarajan; Michael J Becich
Journal:  Acad Med       Date:  2009-07       Impact factor: 6.893

9.  Taxonomizing, sizing, and overcoming the incidentalome.

Authors:  Isaac S Kohane; Michael Hsing; Sek Won Kong
Journal:  Genet Med       Date:  2012-02-09       Impact factor: 8.822

10.  Feasibility of incorporating genomic knowledge into electronic medical records for pharmacogenomic clinical decision support.

Authors:  Casey Lynnette Overby; Peter Tarczy-Hornoch; James I Hoath; Ira J Kalet; David L Veenstra
Journal:  BMC Bioinformatics       Date:  2010-10-28       Impact factor: 3.169

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  17 in total

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Journal:  J Med Syst       Date:  2014-07       Impact factor: 4.460

2.  The National MDS Natural History Study: design of an integrated data and sample biorepository to promote research studies in myelodysplastic syndromes.

Authors:  Mikkael A Sekeres; Steven D Gore; Donald M Stablein; Nancy DiFronzo; Gregory A Abel; Amy E DeZern; Jesse D Troy; Dana E Rollison; John W Thomas; Myron A Waclawiw; Jane Jijun Liu; Tareq Al Baghdadi; Matthew J Walter; Rafael Bejar; Edward J Gorak; Daniel T Starczynowski; James M Foran; James R Cerhan; Lynn C Moscinski; Rami S Komrokji; H Joachim Deeg; Pearlie K Epling-Burnette
Journal:  Leuk Lymphoma       Date:  2019-05-21

3.  Text mining for precision medicine: automating disease-mutation relationship extraction from biomedical literature.

Authors:  Ayush Singhal; Michael Simmons; Zhiyong Lu
Journal:  J Am Med Inform Assoc       Date:  2016-04-27       Impact factor: 4.497

4.  Pragmatic and Ethical Challenges of Incorporating the Genome into the Electronic Medical Record.

Authors:  Adam A Nishimura; Peter Tarczy-Hornoch; Brian H Shirts
Journal:  Curr Genet Med Rep       Date:  2014-12-01

5.  Empowering Personalized Medicine with Big Data and Semantic Web Technology: Promises, Challenges, and Use Cases.

Authors:  Maryam Panahiazar; Vahid Taslimitehrani; Ashutosh Jadhav; Jyotishman Pathak
Journal:  Proc IEEE Int Conf Big Data       Date:  2014-10

6.  Systematic Identification of Genomic Markers for Guiding Iron Oxide Nanoparticles in Cervical Cancer Based on Translational Bioinformatics.

Authors:  Haohan Zhou; Jiayi Tian; Hongyu Sun; Jiaying Fu; Nan Lin; Danni Yuan; Li Zhou; Meihui Xia; Liankun Sun
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7.  Participant views on consent in cancer genetics research: preparing for the precision medicine era.

Authors:  Karen L Edwards; Diane M Korngiebel; Lesley Pfeifer; Deborah Goodman; Anne Renz; Lari Wenzel; Deborah J Bowen; Celeste M Condit
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8.  Dynamic software design for clinical exome and genome analyses: insights from bioinformaticians, clinical geneticists, and genetic counselors.

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Journal:  J Am Med Inform Assoc       Date:  2015-06-27       Impact factor: 4.497

9.  In silico Mapping of Protein Unfolding Mutations for Inherited Disease.

Authors:  Caitlyn L McCafferty; Yuri V Sergeev
Journal:  Sci Rep       Date:  2016-12-01       Impact factor: 4.379

Review 10.  Bioinformatics for precision medicine in oncology: principles and application to the SHIVA clinical trial.

Authors:  Nicolas Servant; Julien Roméjon; Pierre Gestraud; Philippe La Rosa; Georges Lucotte; Séverine Lair; Virginie Bernard; Bruno Zeitouni; Fanny Coffin; Gérôme Jules-Clément; Florent Yvon; Alban Lermine; Patrick Poullet; Stéphane Liva; Stuart Pook; Tatiana Popova; Camille Barette; François Prud'homme; Jean-Gabriel Dick; Maud Kamal; Christophe Le Tourneau; Emmanuel Barillot; Philippe Hupé
Journal:  Front Genet       Date:  2014-05-30       Impact factor: 4.599

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