Literature DB >> 22249274

A validation study of the Qiagen Investigator DIPplex® kit; an INDEL-based assay for human identification.

Bobby L LaRue1, Jianye Ge, Jonathan L King, Bruce Budowle.   

Abstract

Marker sets that are based on small insertion/deletion (INDEL) alleles can serve as useful supplementary or stand-alone assays for human identification. A validation study has been performed on a human identification assay based on a panel of 30 INDELs and amelogenin using the Investigator DIPplex® kit (Qiagen). The assay was able to type DNA from a number of forensically relevant sample types and obtain full profiles with 62 pg of template DNA and partial profiles with as little as 16 pg of template DNA. The assay is reproducible, precise, and non-overlapping alleles from minor contributors were detectable in mixture analysis ranging from 6:1 to 19:1 mixtures. Population studies were performed on the 30 indels, and there were no significant departures from Hardy-Weinberg equilibrium or significant linkage disequilibrium between the markers (after correction for sampling). In all populations, the random match probability was 1.43 × 10(-11) or less, and the power of exclusion was greater than .999999999. We also discovered several microvariant alleles in our population samples. The data support that the Investigator DIPplex® kit provides a powerful supplement or stand-alone capability for human identity testing.

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Year:  2012        PMID: 22249274     DOI: 10.1007/s00414-012-0667-9

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  25 in total

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Authors:  T R Moretti; A L Baumstark; D A Defenbaugh; K M Keys; J B Smerick; B Budowle
Journal:  J Forensic Sci       Date:  2001-05       Impact factor: 1.832

2.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

3.  Validation of the multiplex kit genRESMPX-2 for forensic casework analysis.

Authors:  A Junge; T Lederer; G Braunschweiger; B Madea
Journal:  Int J Legal Med       Date:  2003-10-10       Impact factor: 2.686

4.  Developmental validation of a single-tube amplification of the 13 CODIS STR loci, D2S1338, D19S433, and amelogenin: the AmpFlSTR Identifiler PCR Amplification Kit.

Authors:  Patrick J Collins; Lori K Hennessy; Craig S Leibelt; Rhonda K Roby; Dennis J Reeder; Paul A Foxall
Journal:  J Forensic Sci       Date:  2004-11       Impact factor: 1.832

5.  Developing a SNP panel for forensic identification of individuals.

Authors:  Kenneth K Kidd; Andrew J Pakstis; William C Speed; Elena L Grigorenko; Sylvester L B Kajuna; Nganyirwa J Karoma; Selemani Kungulilo; Jong-Jin Kim; Ru-Band Lu; Adekunle Odunsi; Friday Okonofua; Josef Parnas; Leslie O Schulz; Olga V Zhukova; Judith R Kidd
Journal:  Forensic Sci Int       Date:  2005-12-19       Impact factor: 2.395

6.  Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat.

Authors:  B Brinkmann; M Klintschar; F Neuhuber; J Hühne; B Rolf
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

7.  Further validation of a multiplex STR system for use in routine forensic identity testing.

Authors:  J F Andersen; M J Greenhalgh; H R Butler; S R Kilpatrick; R C Piercy; K A Way; H S Myhill; J C Wright; R Hallet; B H Parkin
Journal:  Forensic Sci Int       Date:  1996-03-05       Impact factor: 2.395

8.  Validation of multiplex polymorphic STR amplification sets developed for personal identification applications.

Authors:  K A Micka; C J Sprecher; A M Lins; C Theisen Comey; B W Koons; C Crouse; D Endean; K Pirelli; S B Lee; N Duda; M Ma; J W Schumm
Journal:  J Forensic Sci       Date:  1996-07       Impact factor: 1.832

9.  Effect of highly fragmented DNA on PCR.

Authors:  E M Golenberg; A Bickel; P Weihs
Journal:  Nucleic Acids Res       Date:  1996-12-15       Impact factor: 16.971

Review 10.  Forensically relevant SNP classes.

Authors:  Bruce Budowle; Angela van Daal
Journal:  Biotechniques       Date:  2008-04       Impact factor: 1.993

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  22 in total

1.  Forensic performance of two insertion-deletion marker assays.

Authors:  M Fondevila; C Phillips; C Santos; R Pereira; L Gusmão; A Carracedo; J M Butler; M V Lareu; P M Vallone
Journal:  Int J Legal Med       Date:  2012-06-20       Impact factor: 2.686

2.  Development of Novel High-Resolution Melting-Based Assays for Genotyping Two Alu Insertion Polymorphisms (FXIIIB and PV92).

Authors:  Yeimy González-Giraldo; Marisol Rodríguez-Dueñas; Diego A Forero
Journal:  Mol Biotechnol       Date:  2016-03       Impact factor: 2.695

3.  A validation study of the Nucleix DSI-Semen kit--a methylation-based assay for semen identification.

Authors:  Bobby L LaRue; Jonathan L King; Bruce Budowle
Journal:  Int J Legal Med       Date:  2012-08-16       Impact factor: 2.686

4.  Evaluation of a 49 InDel Marker HID panel in two specific populations of South America and one population of Northern Africa.

Authors:  R S Moura-Neto; R Silva; I C Mello; T Nogueira; A A Al-Deib; B LaRue; J King; B Budowle
Journal:  Int J Legal Med       Date:  2014-12-17       Impact factor: 2.686

5.  Population data of 30 insertion-deletion markers in four Chinese populations.

Authors:  Meisen Shi; Yaju Liu; Rufeng Bai; Lizhe Jiang; Xiaojiao Lv; Shuhua Ma
Journal:  Int J Legal Med       Date:  2014-10-14       Impact factor: 2.686

6.  Genetic diversity, structure and forensic characteristics of Hmong-Mien-speaking Miao revealed by autosomal insertion/deletion markers.

Authors:  Han Zhang; Guanglin He; Jianxin Guo; Zheng Ren; Hongling Zhang; Qiyan Wang; Jingyan Ji; Meiqing Yang; Jiang Huang; Chuan-Chao Wang
Journal:  Mol Genet Genomics       Date:  2019-07-16       Impact factor: 3.291

7.  Genetic distribution analyses and population background explorations of Gansu Yugur and Guizhou Miao groups via InDel markers.

Authors:  Chun-Hua Yang; Xiao-Ye Jin; Yu-Xin Guo; Wei Cui; Chong Chen; Hao-Tian Meng; Bo-Feng Zhu
Journal:  J Hum Genet       Date:  2019-04-03       Impact factor: 3.172

8.  Developmental validations of a self-developed 39 AIM-InDel panel and its forensic efficiency evaluations in the Shaanxi Han population.

Authors:  Xingru Zhang; Chunmei Shen; Xiaoye Jin; Yuxin Guo; Tong Xie; Bofeng Zhu
Journal:  Int J Legal Med       Date:  2021-04-27       Impact factor: 2.686

9.  Study of InDel genetic markers with forensic and ancestry informative interest in PALOP's immigrant populations in Lisboa.

Authors:  Ana Inácio; Heloísa Afonso Costa; Cláudia Vieira da Silva; Teresa Ribeiro; Maria João Porto; Jorge Costa Santos; Gilberto Igrejas; António Amorim
Journal:  Int J Legal Med       Date:  2016-10-29       Impact factor: 2.686

10.  Beyond STRs: The Role of Diallelic Markers in Forensic Genetics.

Authors:  Peter M Schneider
Journal:  Transfus Med Hemother       Date:  2012-05-15       Impact factor: 3.747

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