Literature DB >> 33907868

Developmental validations of a self-developed 39 AIM-InDel panel and its forensic efficiency evaluations in the Shaanxi Han population.

Xingru Zhang1,2,3, Chunmei Shen4, Xiaoye Jin1,2,3, Yuxin Guo1,2, Tong Xie5, Bofeng Zhu6,7,8.   

Abstract

Most of insertion/deletion polymorphisms are diallelic molecular markers characterized as small amplicon sizes, high inter-population diversities, and low mutation rates, which make them the promising genetic markers in biogeographic ancestor inference field. The developmental validations of a 39 ancestry informative marker-insertion/deletion (AIM-InDel) panel and the genetic polymorphic investigations of this panel were performed in the Shaanxi Han population of China. The developmental validation included the optimizations of PCR-related indicators, repeatability, reproducibility, precision, accuracy, sensitivity, species specificity, stability of the panel, and the abilities in analyzing degraded, casework, and mixture samples, and the present results demonstrated that this 39 AIM-InDel panel was robust, sensitive, and accurate. For the population diversity analyses, the combined discrimination power value of 38 AIM-InDel loci except for rs36038238 locus was 0.999999999931257, indicating that this novel panel was highly polymorphic, biogeographic informative, and could be also used in individual identifications in the Shaanxi Han population.

Entities:  

Keywords:  Ancestry inference; Developmental validation; InDel; Shaanxi Han population

Year:  2021        PMID: 33907868     DOI: 10.1007/s00414-021-02600-4

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  18 in total

1.  A validation study of the Qiagen Investigator DIPplex® kit; an INDEL-based assay for human identification.

Authors:  Bobby L LaRue; Jianye Ge; Jonathan L King; Bruce Budowle
Journal:  Int J Legal Med       Date:  2012-01-15       Impact factor: 2.686

2.  Ancestry, ancestry-informative markers, asthma, and the quest for personalized medicine.

Authors:  Kathleen C Barnes
Journal:  J Allergy Clin Immunol       Date:  2010-12       Impact factor: 10.793

3.  Pacifiplex: an ancestry-informative SNP panel centred on Australia and the Pacific region.

Authors:  Carla Santos; Christopher Phillips; Manuel Fondevila; Runa Daniel; Roland A H van Oorschot; Esteban G Burchard; Moses S Schanfield; Luis Souto; Jolame Uacyisrael; Marc Via; Ángel Carracedo; Maria V Lareu
Journal:  Forensic Sci Int Genet       Date:  2015-10-20       Impact factor: 4.882

4.  Inferring ancestral origin using a single multiplex assay of ancestry-informative marker SNPs.

Authors:  C Phillips; A Salas; J J Sánchez; M Fondevila; A Gómez-Tato; J Alvarez-Dios; M Calaza; M Casares de Cal; D Ballard; M V Lareu; A Carracedo
Journal:  Forensic Sci Int Genet       Date:  2007-08-22       Impact factor: 4.882

5.  Study of InDel genetic markers with forensic and ancestry informative interest in PALOP's immigrant populations in Lisboa.

Authors:  Ana Inácio; Heloísa Afonso Costa; Cláudia Vieira da Silva; Teresa Ribeiro; Maria João Porto; Jorge Costa Santos; Gilberto Igrejas; António Amorim
Journal:  Int J Legal Med       Date:  2016-10-29       Impact factor: 2.686

6.  Implementing a biogeographic ancestry inference service for forensic casework.

Authors:  Soulbee Jin; Maretta Chase; Margaret Henry; Gerry Alderson; James M Morrow; Sobia Malik; David Ballard; Joel McGrory; Neil Fernandopulle; Jonathan Millman; Jack Laird
Journal:  Electrophoresis       Date:  2018-08-29       Impact factor: 3.535

7.  Progress toward an efficient panel of SNPs for ancestry inference.

Authors:  Kenneth K Kidd; William C Speed; Andrew J Pakstis; Manohar R Furtado; Rixun Fang; Abeer Madbouly; Martin Maiers; Mridu Middha; Françoise R Friedlaender; Judith R Kidd
Journal:  Forensic Sci Int Genet       Date:  2014-01-15       Impact factor: 4.882

8.  Analysis of biogeographic ancestry reveals complex genetic histories for indigenous communities of St. Vincent and Trinidad.

Authors:  Jada Benn Torres; Victoria Martucci; Melinda C Aldrich; Miguel G Vilar; Taryn MacKinney; Muhammad Tariq; Jill B Gaieski; Ricardo Bharath Hernandez; Zoila E Browne; Marlon Stevenson; Wendell Walters; Theodore G Schurr
Journal:  Am J Phys Anthropol       Date:  2019-05-24       Impact factor: 2.868

9.  The Use of Forensic DNA Phenotyping in Predicting Appearance and Biogeographic Ancestry.

Authors:  Peter M Schneider; Barbara Prainsack; Manfred Kayser
Journal:  Dtsch Arztebl Int       Date:  2019-12-23       Impact factor: 5.594

10.  Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America.

Authors:  Roman Kosoy; Rami Nassir; Chao Tian; Phoebe A White; Lesley M Butler; Gabriel Silva; Rick Kittles; Marta E Alarcon-Riquelme; Peter K Gregersen; John W Belmont; Francisco M De La Vega; Michael F Seldin
Journal:  Hum Mutat       Date:  2009-01       Impact factor: 4.878

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  2 in total

1.  Insights into AIM-InDel diversities in Yunnan Miao and Hani ethnic groups of China for forensic and population genetic purposes.

Authors:  Wei Cui; Shengjie Nie; Yating Fang; Man Chen; Ming Zhao; Qiong Lan; Chunmei Shen; Bofeng Zhu
Journal:  Hereditas       Date:  2022-05-20       Impact factor: 2.595

2.  Applications of massively parallel sequencing in forensic genetics.

Authors:  Thássia Mayra Telles Carratto; Vitor Matheus Soares Moraes; Tamara Soledad Frontanilla Recalde; Maria Luiza Guimarães de Oliveira; Celso Teixeira Mendes-Junior
Journal:  Genet Mol Biol       Date:  2022-09-19       Impact factor: 2.087

  2 in total

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