Literature DB >> 22243696

Different means, same end-heterochromatin formation by RNAi and RNAi-independent RNA processing factors in fission yeast.

Francisca E Reyes-Turcu1, Shiv Is Grewal.   

Abstract

The assembly of heterochromatin in eukaryotic genomes is critical for diverse chromosomal events including regulation of gene expression, silencing of repetitive DNA elements, proper segregation of chromosomes and maintenance of genomic integrity. Previous studies have shown that noncoding RNAs and the RNA interference (RNAi) machinery promote the assembly of heterochromatin that serves as a multipurpose platform for targeting effectors involved in various chromosomal processes. Recent work has revealed that RNAi-independent mechanisms, involving RNA processing activities that utilize both noncoding and coding RNAs, operate in the assembly of heterochromatin. These findings have established that, in addition to coding for proteins, mRNAs also function as signaling molecules that modify chromatin structure by targeting heterochromatin assembly factors. Published by Elsevier Ltd.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22243696      PMCID: PMC3331891          DOI: 10.1016/j.gde.2011.12.004

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  74 in total

1.  Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin.

Authors:  Ke Zhang; Kerstin Mosch; Wolfgang Fischle; Shiv I S Grewal
Journal:  Nat Struct Mol Biol       Date:  2008-03-16       Impact factor: 15.369

2.  Cohesin complex promotes transcriptional termination between convergent genes in S. pombe.

Authors:  Monika Gullerova; Nick J Proudfoot
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

3.  Balance between distinct HP1 family proteins controls heterochromatin assembly in fission yeast.

Authors:  Mahito Sadaie; Rika Kawaguchi; Yasuko Ohtani; Fumio Arisaka; Katsunori Tanaka; Katsuhiko Shirahige; Jun-Ichi Nakayama
Journal:  Mol Cell Biol       Date:  2008-09-22       Impact factor: 4.272

4.  RNA interference guides histone modification during the S phase of chromosomal replication.

Authors:  Anna Kloc; Mikel Zaratiegui; Elphege Nora; Rob Martienssen
Journal:  Curr Biol       Date:  2008-04-08       Impact factor: 10.834

Review 5.  Epigenetic regulation of heterochromatic DNA stability.

Authors:  Jamy C Peng; Gary H Karpen
Journal:  Curr Opin Genet Dev       Date:  2008-03-26       Impact factor: 5.578

Review 6.  A role for RNAi in heterochromatin formation in Drosophila.

Authors:  Nicole C Riddle; Sarah C R Elgin
Journal:  Curr Top Microbiol Immunol       Date:  2008       Impact factor: 4.291

7.  Splicing factors facilitate RNAi-directed silencing in fission yeast.

Authors:  Elizabeth H Bayne; Manuela Portoso; Alexander Kagansky; Isabelle C Kos-Braun; Takeshi Urano; Karl Ekwall; Flavia Alves; Juri Rappsilber; Robin C Allshire
Journal:  Science       Date:  2008-10-24       Impact factor: 47.728

8.  Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping.

Authors:  Natalie Dutrow; David A Nix; Derick Holt; Brett Milash; Brian Dalley; Erick Westbroek; Timothy J Parnell; Bradley R Cairns
Journal:  Nat Genet       Date:  2008-07-20       Impact factor: 38.330

9.  HP1 proteins form distinct complexes and mediate heterochromatic gene silencing by nonoverlapping mechanisms.

Authors:  Mohammad R Motamedi; Eun-Jin Erica Hong; Xue Li; Scott Gerber; Carilee Denison; Steven Gygi; Danesh Moazed
Journal:  Mol Cell       Date:  2008-12-26       Impact factor: 17.970

10.  Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.

Authors:  Brian T Wilhelm; Samuel Marguerat; Stephen Watt; Falk Schubert; Valerie Wood; Ian Goodhead; Christopher J Penkett; Jane Rogers; Jürg Bähler
Journal:  Nature       Date:  2008-05-18       Impact factor: 49.962

View more
  52 in total

1.  Conserved factor Dhp1/Rat1/Xrn2 triggers premature transcription termination and nucleates heterochromatin to promote gene silencing.

Authors:  Venkata R Chalamcharla; H Diego Folco; Jothy Dhakshnamoorthy; Shiv I S Grewal
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-02       Impact factor: 11.205

2.  Epigenetics. Restricted epigenetic inheritance of H3K9 methylation.

Authors:  Pauline N C B Audergon; Sandra Catania; Alexander Kagansky; Pin Tong; Manu Shukla; Alison L Pidoux; Robin C Allshire
Journal:  Science       Date:  2015-04-03       Impact factor: 47.728

3.  CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.

Authors:  Tommy V Vo; Jothy Dhakshnamoorthy; Madeline Larkin; Martin Zofall; Gobi Thillainadesan; Vanivilasini Balachandran; Sahana Holla; David Wheeler; Shiv I S Grewal
Journal:  Cell Rep       Date:  2019-07-02       Impact factor: 9.423

Review 4.  The piRNA Pathway Guards the Germline Genome Against Transposable Elements.

Authors:  Katalin Fejes Tóth; Dubravka Pezic; Evelyn Stuwe; Alexandre Webster
Journal:  Adv Exp Med Biol       Date:  2016       Impact factor: 2.622

Review 5.  RNAi function, diversity, and loss in the fungal kingdom.

Authors:  R Blake Billmyre; Silvia Calo; Marianna Feretzaki; Xuying Wang; Joseph Heitman
Journal:  Chromosome Res       Date:  2013-12       Impact factor: 5.239

6.  DICER/AGO-dependent epigenetic silencing of D4Z4 repeats enhanced by exogenous siRNA suggests mechanisms and therapies for FSHD.

Authors:  Jong-Won Lim; Lauren Snider; Zizhen Yao; Rabi Tawil; Silvère M Van Der Maarel; Frank Rigo; C Frank Bennett; Galina N Filippova; Stephen J Tapscott
Journal:  Hum Mol Genet       Date:  2015-06-03       Impact factor: 6.150

Review 7.  Small RNAs: essential regulators of gene expression and defenses against environmental stresses in plants.

Authors:  Hsiao-Lin V Wang; Julia A Chekanova
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-02-28       Impact factor: 9.957

8.  Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.

Authors:  Nathan N Lee; Venkata R Chalamcharla; Francisca Reyes-Turcu; Sameet Mehta; Martin Zofall; Vanivilasini Balachandran; Jothy Dhakshnamoorthy; Nitika Taneja; Soichiro Yamanaka; Ming Zhou; Shiv I S Grewal
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

9.  Argonaute 2 Binds Directly to tRNA Genes and Promotes Gene Repression in cis.

Authors:  Jessica L Woolnough; Blake L Atwood; Keith E Giles
Journal:  Mol Cell Biol       Date:  2015-07       Impact factor: 4.272

Review 10.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.