Literature DB >> 18948543

Splicing factors facilitate RNAi-directed silencing in fission yeast.

Elizabeth H Bayne1, Manuela Portoso, Alexander Kagansky, Isabelle C Kos-Braun, Takeshi Urano, Karl Ekwall, Flavia Alves, Juri Rappsilber, Robin C Allshire.   

Abstract

Heterochromatin formation at fission yeast centromeres is directed by RNA interference (RNAi). Noncoding transcripts derived from centromeric repeats are processed into small interfering RNAs (siRNAs) that direct the RNA-induced transcriptional silencing (RITS) effector complex to engage centromere transcripts, resulting in recruitment of the histone H3 lysine 9 methyltransferase Clr4, and hence silencing. We have found that defects in specific splicing factors, but not splicing itself, affect the generation of centromeric siRNAs and consequently centromeric heterochromatin integrity. Moreover, splicing factors physically associate with Cid12, a component of the RNAi machinery, and with centromeric chromatin, consistent with a direct role in RNAi. We propose that spliceosomal complexes provide a platform for siRNA generation and hence facilitate effective centromere repeat silencing.

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Year:  2008        PMID: 18948543      PMCID: PMC2585287          DOI: 10.1126/science.1164029

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  25 in total

1.  Mutation in the prp12+ gene encoding a homolog of SAP130/SF3b130 causes differential inhibition of pre-mRNA splicing and arrest of cell-cycle progression in Schizosaccharomyces pombe.

Authors:  Y Habara; S Urushiyama; T Shibuya; Y Ohshima; T Tani
Journal:  RNA       Date:  2001-05       Impact factor: 4.942

2.  Establishment and maintenance of a heterochromatin domain.

Authors:  Ira M Hall; Gurumurthy D Shankaranarayana; Ken-Ichi Noma; Nabieh Ayoub; Amikam Cohen; Shiv I S Grewal
Journal:  Science       Date:  2002-09-05       Impact factor: 47.728

3.  prp4 from Schizosaccharomyces pombe, a mutant deficient in pre-mRNA splicing isolated using genes containing artificial introns.

Authors:  G H Rosenberg; S K Alahari; N F Käufer
Journal:  Mol Gen Genet       Date:  1991-04

4.  Fission yeast mutants that alleviate transcriptional silencing in centromeric flanking repeats and disrupt chromosome segregation.

Authors:  K Ekwall; G Cranston; R C Allshire
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

5.  RNA interference is required for normal centromere function in fission yeast.

Authors:  Tom Volpe; Vera Schramke; Georgina L Hamilton; Sharon A White; Grace Teng; Robert A Martienssen; Robin C Allshire
Journal:  Chromosome Res       Date:  2003       Impact factor: 5.239

6.  A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.

Authors:  Mahito Sadaie; Tetsushi Iida; Takeshi Urano; Jun-Ichi Nakayama
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

7.  The ribosomal translocase homologue Snu114p is involved in unwinding U4/U6 RNA during activation of the spliceosome.

Authors:  Cornelia Bartels; Christine Klatt; Reinhard Lührmann; Patrizia Fabrizio
Journal:  EMBO Rep       Date:  2002-08-16       Impact factor: 8.807

8.  Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.

Authors:  Thomas A Volpe; Catherine Kidner; Ira M Hall; Grace Teng; Shiv I S Grewal; Robert A Martienssen
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

9.  RNAi-mediated targeting of heterochromatin by the RITS complex.

Authors:  André Verdel; Songtao Jia; Scott Gerber; Tomoyasu Sugiyama; Steven Gygi; Shiv I S Grewal; Danesh Moazed
Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

10.  Pre-mRNA splicing mutants of Schizosaccharomyces pombe.

Authors:  J Potashkin; R Li; D Frendewey
Journal:  EMBO J       Date:  1989-02       Impact factor: 11.598

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  70 in total

1.  Diverse factors are involved in maintaining X chromosome inactivation.

Authors:  Kui Ming Chan; Hui Zhang; Liviu Malureanu; Jan van Deursen; Zhiguo Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-21       Impact factor: 11.205

2.  Conserved factor Dhp1/Rat1/Xrn2 triggers premature transcription termination and nucleates heterochromatin to promote gene silencing.

Authors:  Venkata R Chalamcharla; H Diego Folco; Jothy Dhakshnamoorthy; Shiv I S Grewal
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-02       Impact factor: 11.205

3.  The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly.

Authors:  An-Yun Chang; Stephane E Castel; Evan Ernst; Hyun Soo Kim; Robert A Martienssen
Journal:  Cell Rep       Date:  2017-06-20       Impact factor: 9.423

4.  CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.

Authors:  Tommy V Vo; Jothy Dhakshnamoorthy; Madeline Larkin; Martin Zofall; Gobi Thillainadesan; Vanivilasini Balachandran; Sahana Holla; David Wheeler; Shiv I S Grewal
Journal:  Cell Rep       Date:  2019-07-02       Impact factor: 9.423

5.  Altered interactions within FY/AtCPSF complexes required for Arabidopsis FCA-mediated chromatin silencing.

Authors:  David Manzano; Sebastian Marquardt; Alexandra M E Jones; Isabel Bäurle; Fuquan Liu; Caroline Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-13       Impact factor: 11.205

6.  Core small nuclear ribonucleoprotein particle splicing factor SmD1 modulates RNA interference in Drosophila.

Authors:  Xiao-Peng Xiong; Krishna Kurthkoti; Kung-Yen Chang; Gianluigi Lichinchi; Nabanita De; Anette Schneemann; Ian J MacRae; Tariq M Rana; Norbert Perrimon; Rui Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-25       Impact factor: 11.205

Review 7.  The function of spliceosome components in open mitosis.

Authors:  Jennifer C Hofmann; Alma Husedzinovic; Oliver J Gruss
Journal:  Nucleus       Date:  2010-08-13       Impact factor: 4.197

8.  Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.

Authors:  Nathan N Lee; Venkata R Chalamcharla; Francisca Reyes-Turcu; Sameet Mehta; Martin Zofall; Vanivilasini Balachandran; Jothy Dhakshnamoorthy; Nitika Taneja; Soichiro Yamanaka; Ming Zhou; Shiv I S Grewal
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

9.  Involvement of the spliceosomal U4 small nuclear RNA in heterochromatic gene silencing at fission yeast centromeres.

Authors:  Madoka Chinen; Misato Morita; Kazuhiro Fukumura; Tokio Tani
Journal:  J Biol Chem       Date:  2009-12-14       Impact factor: 5.157

10.  The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis.

Authors:  Cui-Jun Zhang; Jin-Xing Zhou; Jun Liu; Ze-Yang Ma; Su-Wei Zhang; Kun Dou; Huan-Wei Huang; Tao Cai; Renyi Liu; Jian-Kang Zhu; Xin-Jian He
Journal:  EMBO J       Date:  2013-03-22       Impact factor: 11.598

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