Literature DB >> 22232657

Distinct conformations of the protein complex p97-Ufd1-Npl4 revealed by electron cryomicroscopy.

Cecilia Bebeacua1, Andreas Förster, Ciarán McKeown, Hemmo H Meyer, Xiaodong Zhang, Paul S Freemont.   

Abstract

p97 is a key regulator of numerous cellular pathways and associates with ubiquitin-binding adaptors to remodel ubiquitin-modified substrate proteins. How adaptor binding to p97 is coordinated and how adaptors contribute to substrate remodeling is unclear. Here we present the 3D electron cryomicroscopy reconstructions of the major Ufd1-Npl4 adaptor in complex with p97. Our reconstructions show that p97-Ufd1-Npl4 is highly dynamic and that Ufd1-Npl4 assumes distinct positions relative to the p97 ring upon addition of nucleotide. Our results suggest a model for substrate remodeling by p97 and also explains how p97-Ufd1-Npl4 could form other complexes in a hierarchical model of p97-cofactor assembly.

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Year:  2012        PMID: 22232657      PMCID: PMC3268311          DOI: 10.1073/pnas.1114341109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  Distinct AAA-ATPase p97 complexes function in discrete steps of nuclear assembly.

Authors:  M Hetzer; H H Meyer; T C Walther; D Bilbao-Cortes; G Warren; I W Mattaj
Journal:  Nat Cell Biol       Date:  2001-12       Impact factor: 28.824

2.  The AAA ATPase Cdc48/p97 and its partners transport proteins from the ER into the cytosol.

Authors:  Y Ye; H H Meyer; T A Rapoport
Journal:  Nature       Date:  2001-12-06       Impact factor: 49.962

3.  Mobilization of processed, membrane-tethered SPT23 transcription factor by CDC48(UFD1/NPL4), a ubiquitin-selective chaperone.

Authors:  M Rape; T Hoppe; I Gorr; M Kalocay; H Richly; S Jentsch
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

4.  Role of the ubiquitin-selective CDC48(UFD1/NPL4 )chaperone (segregase) in ERAD of OLE1 and other substrates.

Authors:  Sigurd Braun; Kai Matuschewski; Michael Rape; Sven Thoms; Stefan Jentsch
Journal:  EMBO J       Date:  2002-02-15       Impact factor: 11.598

5.  Structure of the AAA ATPase p97.

Authors:  X Zhang; A Shaw; P A Bates; R H Newman; B Gowen; E Orlova; M A Gorman; H Kondo; P Dokurno; J Lally; G Leonard; H Meyer; M van Heel; P S Freemont
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

Review 6.  Protein dislocation from the endoplasmic reticulum--pulling out the suspect.

Authors:  Ernst Jarosch; Ruth Geiss-Friedlander; Birgit Meusser; Jan Walter; Thomas Sommer
Journal:  Traffic       Date:  2002-08       Impact factor: 6.215

7.  Hierarchical binding of cofactors to the AAA ATPase p97.

Authors:  Petra Hänzelmann; Alexander Buchberger; Hermann Schindelin
Journal:  Structure       Date:  2011-06-08       Impact factor: 5.006

8.  HRD4/NPL4 is required for the proteasomal processing of ubiquitinated ER proteins.

Authors:  N W Bays; S K Wilhovsky; A Goradia; K Hodgkiss-Harlow; R Y Hampton
Journal:  Mol Biol Cell       Date:  2001-12       Impact factor: 4.138

9.  Valosin-containing protein is a multi-ubiquitin chain-targeting factor required in ubiquitin-proteasome degradation.

Authors:  R M Dai; C C Li
Journal:  Nat Cell Biol       Date:  2001-08       Impact factor: 28.824

10.  A complex of mammalian ufd1 and npl4 links the AAA-ATPase, p97, to ubiquitin and nuclear transport pathways.

Authors:  H H Meyer; J G Shorter; J Seemann; D Pappin; G Warren
Journal:  EMBO J       Date:  2000-05-15       Impact factor: 11.598

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  26 in total

Review 1.  The exportomer: the peroxisomal receptor export machinery.

Authors:  Harald W Platta; Stefanie Hagen; Ralf Erdmann
Journal:  Cell Mol Life Sci       Date:  2012-09-15       Impact factor: 9.261

2.  NEDD8 ultimate buster-1 long (NUB1L) protein promotes transfer of NEDD8 to proteasome for degradation through the P97UFD1/NPL4 complex.

Authors:  Shuai Liu; Hui Yang; Jian Zhao; Yu-Hang Zhang; Ai-Xin Song; Hong-Yu Hu
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

3.  Structural basis for ovarian tumor domain-containing protein 1 (OTU1) binding to p97/valosin-containing protein (VCP).

Authors:  Su Jin Kim; Jinhong Cho; Eun Joo Song; Soo Jin Kim; Ho Min Kim; Kyung Eun Lee; Se Won Suh; Eunice EunKyeong Kim
Journal:  J Biol Chem       Date:  2014-03-07       Impact factor: 5.157

4.  The Pex1/Pex6 complex is a heterohexameric AAA+ motor with alternating and highly coordinated subunits.

Authors:  Brooke M Gardner; Saikat Chowdhury; Gabriel C Lander; Andreas Martin
Journal:  J Mol Biol       Date:  2015-02-07       Impact factor: 5.469

5.  Ubiquitin- and ATP-dependent unfoldase activity of P97/VCP•NPLOC4•UFD1L is enhanced by a mutation that causes multisystem proteinopathy.

Authors:  Emily E Blythe; Kristine C Olson; Vincent Chau; Raymond J Deshaies
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-16       Impact factor: 11.205

6.  Crystallization and preliminary X-ray crystallographic analysis of the complex between the N-D1 domain of VCP from Homo sapiens and the N domain of OTU1 from Saccharomyces cerevisiae.

Authors:  Su Jin Kim; Eunice EunKyeong Kim
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

Review 7.  Structure and function of the AAA+ ATPase p97/Cdc48p.

Authors:  Di Xia; Wai Kwan Tang; Yihong Ye
Journal:  Gene       Date:  2016-03-03       Impact factor: 3.688

Review 8.  Origin and Functional Evolution of the Cdc48/p97/VCP AAA+ Protein Unfolding and Remodeling Machine.

Authors:  Dominik Barthelme; Robert T Sauer
Journal:  J Mol Biol       Date:  2015-12-01       Impact factor: 5.469

Review 9.  Structural and functional deviations in disease-associated p97 mutants.

Authors:  Wai Kwan Tang; Di Xia
Journal:  J Struct Biol       Date:  2012-05-08       Impact factor: 2.867

Review 10.  Mechanistic insights into ER-associated protein degradation.

Authors:  Xudong Wu; Tom A Rapoport
Journal:  Curr Opin Cell Biol       Date:  2018-04-30       Impact factor: 8.382

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