Literature DB >> 22579784

Structural and functional deviations in disease-associated p97 mutants.

Wai Kwan Tang1, Di Xia.   

Abstract

Missense mutations that occur at the interface between two functional domains in the AAA protein p97 lead to suboptimal performance in its enzymatic activity and impaired intracellular functions, causing human disorders such as inclusion body myopathy associated with Paget's disease of the bone and frontotemporal dementia (IBMPFD). Much progress has been made in characterizing these mutants at cellular, sub-cellular and molecular levels, gaining a substantial understanding of the involvement of p97 in various cellular pathways. At the tissue level, patient biopsies revealed co-localization of p97 with pathologic proteineous inclusions and rimmed vacuoles, which can be reproduced in various cellular and animal models of IBMPFD. At the subcellular level, alterations in p97's ability to bind various adaptor proteins have been demonstrated for some but not all binding partners. Biochemical and biophysical characterizations of pathogenic p97 revealed altered nucleotide binding properties in the D1-domains compared to the wild type. Structural studies showed that mutant p97 are capable of undergoing a uniform transition in the N-domain from a Down- to an Up-conformation in the presence of ATPγS, while in the wild-type p97, this conformational change can only be demonstrated in solutions but not in crystals. These structural and biochemical analyses of IBMPFD mutants shed new light into the mechanism of p97 function. Published by Elsevier Inc.

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Year:  2012        PMID: 22579784      PMCID: PMC4788498          DOI: 10.1016/j.jsb.2012.04.024

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  87 in total

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Authors:  J R Lamb; V Fu; E Wirtz; J D Bangs
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Review 2.  Ubiquitin: same molecule, different degradation pathways.

Authors:  Michael J Clague; Sylvie Urbé
Journal:  Cell       Date:  2010-11-24       Impact factor: 41.582

3.  Crystal structure of FAF1 UBX domain in complex with p97/VCP N domain reveals a conformational change in the conserved FcisP touch-turn motif of UBX domain.

Authors:  Kyoung Hoon Kim; Wonchull Kang; Se Won Suh; Jin Kuk Yang
Journal:  Proteins       Date:  2011-08

4.  The UBX domain: a widespread ubiquitin-like module.

Authors:  A Buchberger; M J Howard; M Proctor; M Bycroft
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

5.  Clinical delineation and localization to chromosome 9p13.3-p12 of a unique dominant disorder in four families: hereditary inclusion body myopathy, Paget disease of bone, and frontotemporal dementia.

Authors:  M J Kovach; B Waggoner; S M Leal; D Gelber; R Khardori; M A Levenstien; C A Shanks; G Gregg; M T Al-Lozi; T Miller; W Rakowicz; G Lopate; J Florence; G Glosser; Z Simmons; J C Morris; M P Whyte; A Pestronk; V E Kimonis
Journal:  Mol Genet Metab       Date:  2001-12       Impact factor: 4.797

6.  The tumor autocrine motility factor receptor, gp78, is a ubiquitin protein ligase implicated in degradation from the endoplasmic reticulum.

Authors:  S Fang; M Ferrone; C Yang; J P Jensen; S Tiwari; A M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

7.  Endolysosomal sorting of ubiquitylated caveolin-1 is regulated by VCP and UBXD1 and impaired by VCP disease mutations.

Authors:  Danilo Ritz; Maja Vuk; Philipp Kirchner; Monika Bug; Sabina Schütz; Arnold Hayer; Sebastian Bremer; Caleb Lusk; Robert H Baloh; Houkeun Lee; Timo Glatter; Matthias Gstaiger; Ruedi Aebersold; Conrad C Weihl; Hemmo Meyer
Journal:  Nat Cell Biol       Date:  2011-08-07       Impact factor: 28.824

8.  TDP-43 mediates degeneration in a novel Drosophila model of disease caused by mutations in VCP/p97.

Authors:  Gillian P Ritson; Sara K Custer; Brian D Freibaum; Jake B Guinto; Dyanna Geffel; Jennifer Moore; Waixing Tang; Matthew J Winton; Manuela Neumann; John Q Trojanowski; Virginia M-Y Lee; Mark S Forman; J Paul Taylor
Journal:  J Neurosci       Date:  2010-06-02       Impact factor: 6.167

9.  Nucleotide dependent motion and mechanism of action of p97/VCP.

Authors:  Byron DeLaBarre; Axel T Brunger
Journal:  J Mol Biol       Date:  2005-03-25       Impact factor: 5.469

10.  The crystal structure of murine p97/VCP at 3.6A.

Authors:  Trevor Huyton; Valerie E Pye; Louise C Briggs; Terence C Flynn; Fabienne Beuron; Hisao Kondo; Jianpeng Ma; Xiaodong Zhang; Paul S Freemont
Journal:  J Struct Biol       Date:  2003-12       Impact factor: 2.867

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  12 in total

1.  Altered intersubunit communication is the molecular basis for functional defects of pathogenic p97 mutants.

Authors:  Wai Kwan Tang; Di Xia
Journal:  J Biol Chem       Date:  2013-11-06       Impact factor: 5.157

2.  Functional chromatography reveals three natural products that target the same protein with distinct mechanisms of action.

Authors:  Min Jin Kang; Tongde Wu; E M Kithsiri Wijeratne; Eric C Lau; Damian J Mason; Celestina Mesa; Joseph Tillotson; Donna D Zhang; A A Leslie Gunatilaka; James J La Clair; Eli Chapman
Journal:  Chembiochem       Date:  2014-08-14       Impact factor: 3.164

3.  Interaction between the AAA+ ATPase p97 and its cofactor ataxin3 in health and disease: Nucleotide-induced conformational changes regulate cofactor binding.

Authors:  Maya V Rao; Dewight R Williams; Simon Cocklin; Patrick J Loll
Journal:  J Biol Chem       Date:  2017-09-22       Impact factor: 5.157

Review 4.  Structure and function of the AAA+ ATPase p97/Cdc48p.

Authors:  Di Xia; Wai Kwan Tang; Yihong Ye
Journal:  Gene       Date:  2016-03-03       Impact factor: 3.688

5.  Dual Unnatural Amino Acid Incorporation and Click-Chemistry Labeling to Enable Single-Molecule FRET Studies of p97 Folding.

Authors:  Taehyung C Lee; Minjin Kang; Chan Hyuk Kim; Peter G Schultz; Eli Chapman; Ashok A Deniz
Journal:  Chembiochem       Date:  2016-04-26       Impact factor: 3.164

Review 6.  Inhibitors of the AAA+ chaperone p97.

Authors:  Eli Chapman; Nick Maksim; Fabian de la Cruz; James J La Clair
Journal:  Molecules       Date:  2015-02-12       Impact factor: 4.411

Review 7.  A Mighty "Protein Extractor" of the Cell: Structure and Function of the p97/CDC48 ATPase.

Authors:  Yihong Ye; Wai Kwan Tang; Ting Zhang; Di Xia
Journal:  Front Mol Biosci       Date:  2017-06-13

8.  Prediction of the P. falciparum target space relevant to malaria drug discovery.

Authors:  Andreas Spitzmüller; Jordi Mestres
Journal:  PLoS Comput Biol       Date:  2013-10-17       Impact factor: 4.475

9.  Role of the D1-D2 Linker of Human VCP/p97 in the Asymmetry and ATPase Activity of the D1-domain.

Authors:  Wai Kwan Tang; Di Xia
Journal:  Sci Rep       Date:  2016-01-28       Impact factor: 4.379

10.  p97 Disease Mutations Modulate Nucleotide-Induced Conformation to Alter Protein-Protein Interactions.

Authors:  Stacie L Bulfer; Tsui-Fen Chou; Michelle R Arkin
Journal:  ACS Chem Biol       Date:  2016-06-13       Impact factor: 5.100

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