Literature DB >> 22217723

The role of robustness in phenotypic adaptation and innovation.

Andreas Wagner1.   

Abstract

Phenotypes that vary in response to DNA mutations are essential for evolutionary adaptation and innovation. Therefore, it seems that robustness, a lack of phenotypic variability, must hinder adaptation. The main purpose of this review is to show why this is not necessarily correct. There are two reasons. The first is that robustness causes the existence of genotype networks--large connected sets of genotypes with the same phenotype. I discuss why genotype networks facilitate phenotypic variability. The second reason emerges from the evolutionary dynamics of evolving populations on genotype networks. I discuss how these dynamics can render highly robust phenotypes more variable, using examples from protein and RNA macromolecules. In addition, robustness can help avoid an important evolutionary conflict between the interests of individuals and populations-a conflict that can impede evolutionary adaptation.

Mesh:

Year:  2012        PMID: 22217723      PMCID: PMC3282381          DOI: 10.1098/rspb.2011.2293

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  67 in total

Review 1.  Protein folds, functions and evolution.

Authors:  J M Thornton; C A Orengo; A E Todd; F M Pearl
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

2.  Connectivity of neutral networks, overdispersion, and structural conservation in protein evolution.

Authors:  Ugo Bastolla; Markus Porto; Markus H Eduardo Roman; Michele H Vendruscolo
Journal:  J Mol Evol       Date:  2003-03       Impact factor: 2.395

3.  Enzyme function less conserved than anticipated.

Authors:  Burkhard Rost
Journal:  J Mol Biol       Date:  2002-04-26       Impact factor: 5.469

4.  Directed evolution of an RNA enzyme.

Authors:  A A Beaudry; G F Joyce
Journal:  Science       Date:  1992-07-31       Impact factor: 47.728

5.  Thermodynamic prediction of protein neutrality.

Authors:  Jesse D Bloom; Jonathan J Silberg; Claus O Wilke; D Allan Drummond; Christoph Adami; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-11       Impact factor: 11.205

6.  In silico predicted robustness of viroids RNA secondary structures. I. The effect of single mutations.

Authors:  Rafael Sanjuán; Javier Forment; Santiago F Elena
Journal:  Mol Biol Evol       Date:  2006-05-05       Impact factor: 16.240

Review 7.  Evolvability.

Authors:  M Kirschner; J Gerhart
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

8.  Phenotypic robustness can increase phenotypic variability after nongenetic perturbations in gene regulatory circuits.

Authors:  C Espinosa-Soto; O C Martin; A Wagner
Journal:  J Evol Biol       Date:  2011-03-28       Impact factor: 2.411

9.  Genotype networks, innovation, and robustness in sulfur metabolism.

Authors:  João F Matias Rodrigues; Andreas Wagner
Journal:  BMC Syst Biol       Date:  2011-03-07

10.  The ascent of the abundant: how mutational networks constrain evolution.

Authors:  Matthew C Cowperthwaite; Evan P Economo; William R Harcombe; Eric L Miller; Lauren Ancel Meyers
Journal:  PLoS Comput Biol       Date:  2008-07-18       Impact factor: 4.475

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  40 in total

1.  Differential Masking of Natural Genetic Variation by miR-9a in Drosophila.

Authors:  Justin J Cassidy; Alexander J Straughan; Richard W Carthew
Journal:  Genetics       Date:  2015-11-27       Impact factor: 4.562

2.  Surviving evolutionary escape on complex genotype-phenotype networks.

Authors:  Esther Ibáñez-Marcelo; Tomás Alarcón
Journal:  J Math Biol       Date:  2015-05-23       Impact factor: 2.259

3.  On the Nature and Evolutionary Impact of Phenotypic Robustness Mechanisms.

Authors:  Mark L Siegal; Jun-Yi Leu
Journal:  Annu Rev Ecol Evol Syst       Date:  2014-11-01       Impact factor: 13.915

Review 4.  Structure and function of long noncoding RNAs in epigenetic regulation.

Authors:  Tim R Mercer; John S Mattick
Journal:  Nat Struct Mol Biol       Date:  2013-03       Impact factor: 15.369

5.  Mutational robustness accelerates the origin of novel RNA phenotypes through phenotypic plasticity.

Authors:  Andreas Wagner
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

6.  Phenotypic innovation through recombination in genome-scale metabolic networks.

Authors:  Sayed-Rzgar Hosseini; Olivier C Martin; Andreas Wagner
Journal:  Proc Biol Sci       Date:  2016-09-28       Impact factor: 5.349

Review 7.  From microbiology to cancer biology: the Rid protein family prevents cellular damage caused by endogenously generated reactive nitrogen species.

Authors:  Diana M Downs; Dustin C Ernst
Journal:  Mol Microbiol       Date:  2015-02-26       Impact factor: 3.501

8.  Predicting metabolic adaptation from networks of mutational paths.

Authors:  Christos Josephides; Peter S Swain
Journal:  Nat Commun       Date:  2017-09-25       Impact factor: 14.919

9.  Effects of mutation and selection on plasticity of a promoter activity in Saccharomyces cerevisiae.

Authors:  Fabien Duveau; David C Yuan; Brian P H Metzger; Andrea Hodgins-Davis; Patricia J Wittkopp
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-19       Impact factor: 11.205

Review 10.  Mechanism of evolution by genetic assimilation : Equivalence and independence of genetic mutation and epigenetic modulation in phenotypic expression.

Authors:  Ken Nishikawa; Akira R Kinjo
Journal:  Biophys Rev       Date:  2018-02-21
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