Literature DB >> 25620221

From microbiology to cancer biology: the Rid protein family prevents cellular damage caused by endogenously generated reactive nitrogen species.

Diana M Downs1, Dustin C Ernst.   

Abstract

The Rid family of proteins is highly conserved and broadly distributed throughout the domains of life. Genetic and biochemical studies, primarily in Salmonella enterica, have defined a role for RidA in responding to endogenously generated reactive metabolites. The data show that 2-aminoacrylate (2AA), a reactive enamine intermediate generated by some pyridoxal 5'-phosphate-dependent enzymes, accumulates in the absence of RidA. The accumulation of 2AA leads to covalent modification and inactivation of several enzymes involved in essential metabolic processes. This review describes the 2AA hydrolyzing activity of RidA and the effect of this biochemical activity on the metabolic network, which impacts organism fitness. The reported activity of RidA and the consequences encountered in vivo when RidA is absent have challenged fundamental assumptions in enzymology, biochemistry and cell metabolism regarding the fate of transiently generated reactive enamine intermediates. The current understanding of RidA in Salmonella and the broad distribution of Rid family proteins provide exciting opportunities for future studies to define metabolic roles of Rid family members from microbes to man.
© 2015 John Wiley & Sons Ltd.

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Year:  2015        PMID: 25620221      PMCID: PMC4974816          DOI: 10.1111/mmi.12945

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  82 in total

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Review 2.  Pathways of oxidative damage.

Authors:  James A Imlay
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

Review 3.  Toward a systems biology perspective on enzyme evolution.

Authors:  Shelley D Copley
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

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Authors:  J M Kim; H Yoshikawa; K Shirahige
Journal:  Genes Cells       Date:  2001-06       Impact factor: 1.891

Review 5.  Pyridoxal enzymes: mechanistic diversity and uniformity.

Authors:  H Hayashi
Journal:  J Biochem       Date:  1995-09       Impact factor: 3.387

Review 6.  Chemical reactivity drives spatiotemporal organisation of bacterial metabolism.

Authors:  Víctor de Lorenzo; Agnieszka Sekowska; Antoine Danchin
Journal:  FEMS Microbiol Rev       Date:  2014-12-04       Impact factor: 16.408

7.  The stoichiometry and kinetics of the inducible cysteine desulfhydrase from Salmonella typhimurium.

Authors:  N M Kredich; L J Foote; B S Keenan
Journal:  J Biol Chem       Date:  1973-09-10       Impact factor: 5.157

8.  Threonine deaminase from Salmonella typhimurium. I. Purification and properties.

Authors:  R O Burns; M H Zarlengo
Journal:  J Biol Chem       Date:  1968-01-10       Impact factor: 5.157

9.  Inhibition of Escherichia coli growth by acetic acid: a problem with methionine biosynthesis and homocysteine toxicity.

Authors:  Andrew J Roe; Conor O'Byrne; Debra McLaggan; Ian R Booth
Journal:  Microbiology       Date:  2002-07       Impact factor: 2.777

10.  Decreased coenzyme A levels in ridA mutant strains of Salmonella enterica result from inactivated serine hydroxymethyltransferase.

Authors:  Jeffrey M Flynn; Melissa R Christopherson; Diana M Downs
Journal:  Mol Microbiol       Date:  2013-07-19       Impact factor: 3.501

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  15 in total

Review 1.  RidA Proteins Protect against Metabolic Damage by Reactive Intermediates.

Authors:  Jessica L Irons; Kelsey Hodge-Hanson; Diana M Downs
Journal:  Microbiol Mol Biol Rev       Date:  2020-07-15       Impact factor: 11.056

2.  Increased Activity of Cystathionine β-Lyase Suppresses 2-Aminoacrylate Stress in Salmonella enterica.

Authors:  Dustin C Ernst; Melissa R Christopherson; Diana M Downs
Journal:  J Bacteriol       Date:  2018-04-09       Impact factor: 3.490

3.  Expression of Pyridoxal 5'-Phosphate-Independent Racemases Can Reduce 2-Aminoacrylate Stress in Salmonella enterica.

Authors:  Kelsey M Hodge-Hanson; Allison Zoino; Diana M Downs
Journal:  J Bacteriol       Date:  2018-04-09       Impact factor: 3.490

4.  Analyses of variants of the Ser/Thr dehydratase IlvA provide insight into 2-aminoacrylate metabolism in Salmonella enterica.

Authors:  Andrew J Borchert; Diana M Downs
Journal:  J Biol Chem       Date:  2018-10-16       Impact factor: 5.157

5.  Absence of MMF1 disrupts heme biosynthesis by targeting Hem1pin Saccharomyces cerevisiae.

Authors:  Gregory H Whitaker; Dustin C Ernst; Diana M Downs
Journal:  Yeast       Date:  2021-10-10       Impact factor: 3.325

6.  PA5339, a RidA Homolog, Is Required for Full Growth in Pseudomonas aeruginosa.

Authors:  Jessica Irons; Kelsey M Hodge-Hanson; Diana M Downs
Journal:  J Bacteriol       Date:  2018-10-23       Impact factor: 3.490

7.  EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde.

Authors:  Jannell V Bazurto; Dipti D Nayak; Tomislav Ticak; Milya Davlieva; Jessica A Lee; Chandler N Hellenbrand; Leah B Lambert; Olivia J Benski; Caleb J Quates; Jill L Johnson; Jagdish Suresh Patel; F Marty Ytreberg; Yousif Shamoo; Christopher J Marx
Journal:  PLoS Biol       Date:  2021-05-26       Impact factor: 8.029

8.  Biofilm Formation by Clostridium ljungdahlii Is Induced by Sodium Chloride Stress: Experimental Evaluation and Transcriptome Analysis.

Authors:  Jo Philips; Korneel Rabaey; Derek R Lovley; Madeline Vargas
Journal:  PLoS One       Date:  2017-01-24       Impact factor: 3.240

9.  Experimental and Metabolic Modeling Evidence for a Folate-Cleaving Side-Activity of Ketopantoate Hydroxymethyltransferase (PanB).

Authors:  Jennifer J Thiaville; Océane Frelin; Carolina García-Salinas; Katherine Harrison; Ghulam Hasnain; Nicole A Horenstein; Rocio I Díaz de la Garza; Christopher S Henry; Andrew D Hanson; Valérie de Crécy-Lagard
Journal:  Front Microbiol       Date:  2016-03-31       Impact factor: 5.640

10.  Mmf1p Couples Amino Acid Metabolism to Mitochondrial DNA Maintenance in Saccharomyces cerevisiae.

Authors:  Dustin C Ernst; Diana M Downs
Journal:  mBio       Date:  2018-02-27       Impact factor: 7.867

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