Literature DB >> 22207623

Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Siyang Sun1, Song Gao, Kiran Kondabagil, Ye Xiang, Michael G Rossmann, Venigalla B Rao.   

Abstract

Tailed DNA bacteriophages assemble empty procapsids that are subsequently filled with the viral genome by means of a DNA packaging machine situated at a special fivefold vertex. The packaging machine consists of a "small terminase" and a "large terminase" component. One of the functions of the small terminase is to initiate packaging of the viral genome, whereas the large terminase is responsible for the ATP-powered translocation of DNA. The small terminase subunit has three domains, an N-terminal DNA-binding domain, a central oligomerization domain, and a C-terminal domain for interacting with the large terminase. Here we report structures of the central domain in two different oligomerization states for a small terminase from the T4 family of phages. In addition, we report biochemical studies that establish the function for each of the small terminase domains. On the basis of the structural and biochemical information, we propose a model for DNA packaging initiation.

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Year:  2011        PMID: 22207623      PMCID: PMC3271864          DOI: 10.1073/pnas.1110224109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  Specificity of interactions among the DNA-packaging machine components of T4-related bacteriophages.

Authors:  Song Gao; Venigalla B Rao
Journal:  J Biol Chem       Date:  2010-12-02       Impact factor: 5.157

Review 2.  The bacteriophage DNA packaging motor.

Authors:  Venigalla B Rao; Michael Feiss
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

3.  Structural basis for DNA recognition and loading into a viral packaging motor.

Authors:  Carina R Büttner; Maria Chechik; Miguel Ortiz-Lombardía; Callum Smits; Ima-Obong Ebong; Victor Chechik; Gunnar Jeschke; Eric Dykeman; Stefano Benini; Carol V Robinson; Juan C Alonso; Alfred A Antson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

Review 4.  The DNA-packaging nanomotor of tailed bacteriophages.

Authors:  Sherwood R Casjens
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

5.  Crystal structure of the DNA-recognition component of the bacterial virus Sf6 genome-packaging machine.

Authors:  Haiyan Zhao; Casey J Finch; Reuben D Sequeira; Brian A Johnson; John E Johnson; Sherwood R Casjens; Liang Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-19       Impact factor: 11.205

Review 6.  Genome packaging in viruses.

Authors:  Siyang Sun; Venigalla B Rao; Michael G Rossmann
Journal:  Curr Opin Struct Biol       Date:  2010-01-08       Impact factor: 6.809

7.  Three-dimensional structure of a viral genome-delivery portal vertex.

Authors:  Adam S Olia; Peter E Prevelige; John E Johnson; Gino Cingolani
Journal:  Nat Struct Mol Biol       Date:  2011-04-17       Impact factor: 15.369

8.  Regulation by interdomain communication of a headful packaging nuclease from bacteriophage T4.

Authors:  Manjira Ghosh-Kumar; Tanfis I Alam; Bonnie Draper; John D Stack; Venigalla B Rao
Journal:  Nucleic Acids Res       Date:  2010-11-24       Impact factor: 16.971

9.  Bacteriophage T4 and its relatives.

Authors:  Jim D Karam; Eric S Miller
Journal:  Virol J       Date:  2010-10-28       Impact factor: 4.099

10.  The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces.

Authors:  Siyang Sun; Kiran Kondabagil; Bonnie Draper; Tanfis I Alam; Valorie D Bowman; Zhihong Zhang; Shylaja Hegde; Andrei Fokine; Michael G Rossmann; Venigalla B Rao
Journal:  Cell       Date:  2008-12-26       Impact factor: 66.850

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  50 in total

1.  Small terminase couples viral DNA binding to genome-packaging ATPase activity.

Authors:  Ankoor Roy; Anshul Bhardwaj; Pinaki Datta; Gabriel C Lander; Gino Cingolani
Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

2.  Thermodynamic Interrogation of the Assembly of a Viral Genome Packaging Motor Complex.

Authors:  Teng-Chieh Yang; David Ortiz; Lyn'Al Nosaka; Gabriel C Lander; Carlos Enrique Catalano
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

3.  The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain.

Authors:  Brendan J Hilbert; Janelle A Hayes; Nicholas P Stone; Rui-Gang Xu; Brian A Kelch
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

Review 4.  Old, new, and widely true: The bacteriophage T4 DNA packaging mechanism.

Authors:  Lindsay W Black
Journal:  Virology       Date:  2015-02-27       Impact factor: 3.616

5.  Structural basis for DNA recognition and loading into a viral packaging motor.

Authors:  Carina R Büttner; Maria Chechik; Miguel Ortiz-Lombardía; Callum Smits; Ima-Obong Ebong; Victor Chechik; Gunnar Jeschke; Eric Dykeman; Stefano Benini; Carol V Robinson; Juan C Alonso; Alfred A Antson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

6.  Structure-function analysis of the DNA translocating portal of the bacteriophage T4 packaging machine.

Authors:  Victor Padilla-Sanchez; Song Gao; Hyung Rae Kim; Daisuke Kihara; Lei Sun; Michael G Rossmann; Venigalla B Rao
Journal:  J Mol Biol       Date:  2013-10-11       Impact factor: 5.469

Review 7.  Structure, assembly, and DNA packaging of the bacteriophage T4 head.

Authors:  Lindsay W Black; Venigalla B Rao
Journal:  Adv Virus Res       Date:  2012       Impact factor: 9.937

8.  Orthologous gene clusters and taxon signature genes for viruses of prokaryotes.

Authors:  David M Kristensen; Alison S Waller; Takuji Yamada; Peer Bork; Arcady R Mushegian; Eugene V Koonin
Journal:  J Bacteriol       Date:  2012-12-07       Impact factor: 3.490

9.  Expression, purification, crystallization and preliminary X-ray diffraction analysis of a lactococcal bacteriophage small terminase subunit.

Authors:  Bin Ren; Tam M Pham; Regina Surjadi; Christine P Robinson; Thien-Kim Le; P Scott Chandry; Thomas S Peat; William J McKinstry
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-22

Review 10.  Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.

Authors:  Venigalla B Rao; Michael Feiss
Journal:  Annu Rev Virol       Date:  2015-09-10       Impact factor: 10.431

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