Literature DB >> 20060706

Genome packaging in viruses.

Siyang Sun1, Venigalla B Rao, Michael G Rossmann.   

Abstract

Genome packaging is a fundamental process in a viral life cycle. Many viruses assemble preformed capsids into which the genomic material is subsequently packaged. These viruses use a packaging motor protein that is driven by the hydrolysis of ATP to condense the nucleic acids into a confined space. How these motor proteins package viral genomes had been poorly understood until recently, when a few X-ray crystal structures and cryo-electron microscopy (cryo-EM) structures became available. Here we discuss various aspects of genome packaging and compare the mechanisms proposed for packaging motors on the basis of structural information. Copyright 2009 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20060706      PMCID: PMC2948483          DOI: 10.1016/j.sbi.2009.12.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  61 in total

1.  Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation.

Authors:  Erika J Mancini; Denis E Kainov; Jonathan M Grimes; Roman Tuma; Dennis H Bamford; David I Stuart
Journal:  Cell       Date:  2004-09-17       Impact factor: 41.582

2.  Intermediates in the assembly pathway of the double-stranded RNA virus phi6.

Authors:  S J Butcher; T Dokland; P M Ojala; D H Bamford; S D Fuller
Journal:  EMBO J       Date:  1997-07-16       Impact factor: 11.598

3.  RNA binding, packaging and polymerase activities of the different incomplete polymerase complex particles of dsRNA bacteriophage phi 6.

Authors:  J T Juuti; D H Bamford
Journal:  J Mol Biol       Date:  1995-06-09       Impact factor: 5.469

4.  Assemblages of simian virus 40 capsid proteins and viral DNA visualized by electron microscopy.

Authors:  Vered Roitman-Shemer; Jitka Stokrova; Jitka Forstova; Ariella Oppenheim
Journal:  Biochem Biophys Res Commun       Date:  2006-12-13       Impact factor: 3.575

5.  DNA packaging ATPase of bacteriophage T3.

Authors:  M Morita; M Tasaka; H Fujisawa
Journal:  Virology       Date:  1993-04       Impact factor: 3.616

6.  The headful packaging nuclease of bacteriophage T4.

Authors:  Tanfis I Alam; Bonnie Draper; Kiran Kondabagil; Francisco J Rentas; Manjira Ghosh-Kumar; Siyang Sun; Michael G Rossmann; Venigalla B Rao
Journal:  Mol Microbiol       Date:  2008-07-04       Impact factor: 3.501

7.  Pol of gag-pol fusion protein required for encapsidation of viral RNA of yeast L-A virus.

Authors:  T Fujimura; J C Ribas; A M Makhov; R B Wickner
Journal:  Nature       Date:  1992-10-22       Impact factor: 49.962

8.  Role of sindbis virus capsid protein region II in nucleocapsid core assembly and encapsidation of genomic RNA.

Authors:  Ranjit Warrier; Benjamin R Linger; Barbara L Golden; Richard J Kuhn
Journal:  J Virol       Date:  2008-02-27       Impact factor: 5.103

9.  phi29 DNA polymerase-terminal protein interaction. Involvement of residues specifically conserved among protein-primed DNA polymerases.

Authors:  Irene Rodríguez; José M Lázaro; Margarita Salas; Miguel De Vega
Journal:  J Mol Biol       Date:  2004-04-02       Impact factor: 5.469

Review 10.  Is HIV-1 RNA dimerization a prerequisite for packaging? Yes, no, probably?

Authors:  Rodney S Russell; Chen Liang; Mark A Wainberg
Journal:  Retrovirology       Date:  2004-09-02       Impact factor: 4.602

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  58 in total

1.  Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Authors:  Siyang Sun; Song Gao; Kiran Kondabagil; Ye Xiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

2.  Structure of p22 headful packaging nuclease.

Authors:  Ankoor Roy; Gino Cingolani
Journal:  J Biol Chem       Date:  2012-06-19       Impact factor: 5.157

Review 3.  Hepatitis C virus non-structural protein 3 (HCV NS3): a multifunctional antiviral target.

Authors:  Kevin D Raney; Suresh D Sharma; Ibrahim M Moustafa; Craig E Cameron
Journal:  J Biol Chem       Date:  2010-05-10       Impact factor: 5.157

4.  Small terminase couples viral DNA binding to genome-packaging ATPase activity.

Authors:  Ankoor Roy; Anshul Bhardwaj; Pinaki Datta; Gabriel C Lander; Gino Cingolani
Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

5.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

6.  Stepwise expansion of the bacteriophage ϕ6 procapsid: possible packaging intermediates.

Authors:  Daniel Nemecek; Naiqian Cheng; Jian Qiao; Leonard Mindich; Alasdair C Steven; J Bernard Heymann
Journal:  J Mol Biol       Date:  2011-10-12       Impact factor: 5.469

Review 7.  The DNA-packaging nanomotor of tailed bacteriophages.

Authors:  Sherwood R Casjens
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

8.  Characterization of Empty adenovirus particles assembled in the absence of a functional adenovirus IVa2 protein.

Authors:  Philomena Ostapchuk; Matthew Almond; Patrick Hearing
Journal:  J Virol       Date:  2011-03-30       Impact factor: 5.103

9.  The scrunchworm hypothesis: transitions between A-DNA and B-DNA provide the driving force for genome packaging in double-stranded DNA bacteriophages.

Authors:  Stephen C Harvey
Journal:  J Struct Biol       Date:  2014-12-05       Impact factor: 2.867

Review 10.  Polyamines and Their Role in Virus Infection.

Authors:  Bryan C Mounce; Michelle E Olsen; Marco Vignuzzi; John H Connor
Journal:  Microbiol Mol Biol Rev       Date:  2017-09-13       Impact factor: 11.056

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