Literature DB >> 19109896

The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces.

Siyang Sun1, Kiran Kondabagil, Bonnie Draper, Tanfis I Alam, Valorie D Bowman, Zhihong Zhang, Shylaja Hegde, Andrei Fokine, Michael G Rossmann, Venigalla B Rao.   

Abstract

Viral genomes are packaged into "procapsids" by powerful molecular motors. We report the crystal structure of the DNA packaging motor protein, gene product 17 (gp17), in bacteriophage T4. The structure consists of an N-terminal ATPase domain, which provides energy for compacting DNA, and a C-terminal nuclease domain, which terminates packaging. We show that another function of the C-terminal domain is to translocate the genome into the procapsid. The two domains are in close contact in the crystal structure, representing a "tensed state." A cryo-electron microscopy reconstruction of the T4 procapsid complexed with gp17 shows that the packaging motor is a pentamer and that the domains within each monomer are spatially separated, representing a "relaxed state." These structures suggest a mechanism, supported by mutational and other data, in which electrostatic forces drive the DNA packaging by alternating between tensed and relaxed states. Similar mechanisms may occur in other molecular motors.

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Year:  2008        PMID: 19109896     DOI: 10.1016/j.cell.2008.11.015

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  140 in total

1.  The herpes simplex virus 1 UL17 protein is the second constituent of the capsid vertex-specific component required for DNA packaging and retention.

Authors:  Katerina Toropova; Jamie B Huffman; Fred L Homa; James F Conway
Journal:  J Virol       Date:  2011-06-01       Impact factor: 5.103

2.  Structure of the three N-terminal immunoglobulin domains of the highly immunogenic outer capsid protein from a T4-like bacteriophage.

Authors:  Andrei Fokine; Mohammad Z Islam; Zhihong Zhang; Valorie D Bowman; Venigalla B Rao; Michael G Rossmann
Journal:  J Virol       Date:  2011-06-01       Impact factor: 5.103

3.  Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Authors:  Siyang Sun; Song Gao; Kiran Kondabagil; Ye Xiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

4.  Structure of p22 headful packaging nuclease.

Authors:  Ankoor Roy; Gino Cingolani
Journal:  J Biol Chem       Date:  2012-06-19       Impact factor: 5.157

5.  Structure and inhibition of herpesvirus DNA packaging terminase nuclease domain.

Authors:  Marta Nadal; Philippe J Mas; Phillipe J Mas; Alexandre G Blanco; Carme Arnan; Maria Solà; Darren J Hart; Miquel Coll
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-30       Impact factor: 11.205

6.  Current limitations in native mass spectrometry based structural biology.

Authors:  Esther van Duijn
Journal:  J Am Soc Mass Spectrom       Date:  2010-01-04       Impact factor: 3.109

7.  Mutations altering a structurally conserved loop-helix-loop region of a viral packaging motor change DNA translocation velocity and processivity.

Authors:  James M Tsay; Jean Sippy; Damian DelToro; Benjamin T Andrews; Bonnie Draper; Venigalla Rao; Carlos E Catalano; Michael Feiss; Douglas E Smith
Journal:  J Biol Chem       Date:  2010-06-04       Impact factor: 5.157

8.  Specificity of interactions among the DNA-packaging machine components of T4-related bacteriophages.

Authors:  Song Gao; Venigalla B Rao
Journal:  J Biol Chem       Date:  2010-12-02       Impact factor: 5.157

9.  Common Evolutionary Origin of Procapsid Proteases, Phage Tail Tubes, and Tubes of Bacterial Type VI Secretion Systems.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Structure       Date:  2016-09-22       Impact factor: 5.006

10.  The scrunchworm hypothesis: transitions between A-DNA and B-DNA provide the driving force for genome packaging in double-stranded DNA bacteriophages.

Authors:  Stephen C Harvey
Journal:  J Struct Biol       Date:  2014-12-05       Impact factor: 2.867

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