Literature DB >> 21499245

Three-dimensional structure of a viral genome-delivery portal vertex.

Adam S Olia1, Peter E Prevelige, John E Johnson, Gino Cingolani.   

Abstract

DNA viruses such as bacteriophages and herpesviruses deliver their genome into and out of the capsid through large proteinaceous assemblies, known as portal proteins. Here, we report two snapshots of the dodecameric portal protein of bacteriophage P22. The 3.25-Å-resolution structure of the portal-protein core bound to 12 copies of gene product 4 (gp4) reveals a ~1.1-MDa assembly formed by 24 proteins. Unexpectedly, a lower-resolution structure of the full-length portal protein unveils the unique topology of the C-terminal domain, which forms a ~200-Å-long α-helical barrel. This domain inserts deeply into the virion and is highly conserved in the Podoviridae family. We propose that the barrel domain facilitates genome spooling onto the interior surface of the capsid during genome packaging and, in analogy to a rifle barrel, increases the accuracy of genome ejection into the host cell.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21499245      PMCID: PMC3087855          DOI: 10.1038/nsmb.2023

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  49 in total

1.  Structure of the bacteriophage phi29 DNA packaging motor.

Authors:  A A Simpson; Y Tao; P G Leiman; M O Badasso; Y He; P J Jardine; N H Olson; M C Morais; S Grimes; D L Anderson; T S Baker; M G Rossmann
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

2.  Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle.

Authors:  Alicia Guasch; Joan Pous; Borja Ibarra; F Xavier Gomis-Rüth; José María Valpuesta; Natalia Sousa; José L Carrascosa; Miquel Coll
Journal:  J Mol Biol       Date:  2002-01-25       Impact factor: 5.469

3.  Structure determination of the head-tail connector of bacteriophage phi29.

Authors:  A A Simpson; P G Leiman; Y Tao; Y He; M O Badasso; P J Jardine; D L Anderson; M G Rossmann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-08-23

4.  Structure and polymorphism of the UL6 portal protein of herpes simplex virus type 1.

Authors:  Benes L Trus; Naiqian Cheng; William W Newcomb; Fred L Homa; Jay C Brown; Alasdair C Steven
Journal:  J Virol       Date:  2004-11       Impact factor: 5.103

5.  Nucleotide sequence of the bacteriophage P22 genes required for DNA packaging.

Authors:  K Eppler; E Wyckoff; J Goates; R Parr; S Casjens
Journal:  Virology       Date:  1991-08       Impact factor: 3.616

6.  A small viral RNA is required for in vitro packaging of bacteriophage phi 29 DNA.

Authors:  P X Guo; S Erickson; D Anderson
Journal:  Science       Date:  1987-05-08       Impact factor: 47.728

Review 7.  'Let the phage do the work': using the phage P22 coat protein structures as a framework to understand its folding and assembly mutants.

Authors:  Carolyn M Teschke; Kristin N Parent
Journal:  Virology       Date:  2010-03-16       Impact factor: 3.616

8.  Crystal structure of the DNA-recognition component of the bacterial virus Sf6 genome-packaging machine.

Authors:  Haiyan Zhao; Casey J Finch; Reuben D Sequeira; Brian A Johnson; John E Johnson; Sherwood R Casjens; Liang Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-19       Impact factor: 11.205

9.  An evolutionarily conserved family of virion tail needles related to bacteriophage P22 gp26: correlation between structural stability and length of the alpha-helical trimeric coiled coil.

Authors:  Anshul Bhardwaj; Nancy Walker-Kopp; Sherwood R Casjens; Gino Cingolani
Journal:  J Mol Biol       Date:  2009-05-29       Impact factor: 5.469

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  87 in total

Review 1.  Virus maturation.

Authors:  David Veesler; John E Johnson
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

Review 2.  Procapsid assembly, maturation, nuclear exit: dynamic steps in the production of infectious herpesvirions.

Authors:  Giovanni Cardone; J Bernard Heymann; Naiqian Cheng; Benes L Trus; Alasdair C Steven
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

3.  Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Authors:  Siyang Sun; Song Gao; Kiran Kondabagil; Ye Xiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

4.  Structure of p22 headful packaging nuclease.

Authors:  Ankoor Roy; Gino Cingolani
Journal:  J Biol Chem       Date:  2012-06-19       Impact factor: 5.157

5.  Small terminase couples viral DNA binding to genome-packaging ATPase activity.

Authors:  Ankoor Roy; Anshul Bhardwaj; Pinaki Datta; Gabriel C Lander; Gino Cingolani
Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

6.  Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions.

Authors:  Anshul Bhardwaj; Rajeshwer S Sankhala; Adam S Olia; Dewey Brooke; Sherwood R Casjens; Derek J Taylor; Peter E Prevelige; Gino Cingolani
Journal:  J Biol Chem       Date:  2015-11-16       Impact factor: 5.157

7.  Resolution and Probabilistic Models of Components in CryoEM Maps of Mature P22 Bacteriophage.

Authors:  Grigore Pintilie; Dong-Hua Chen; Cameron A Haase-Pettingell; Jonathan A King; Wah Chiu
Journal:  Biophys J       Date:  2015-12-30       Impact factor: 4.033

Review 8.  Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism.

Authors:  Peixuan Guo; Hiroyuki Noji; Christopher M Yengo; Zhengyi Zhao; Ian Grainge
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-27       Impact factor: 11.056

Review 9.  Nucleic acid packaging in viruses.

Authors:  Jeffrey A Speir; John E Johnson
Journal:  Curr Opin Struct Biol       Date:  2012-01-23       Impact factor: 6.809

10.  The scrunchworm hypothesis: transitions between A-DNA and B-DNA provide the driving force for genome packaging in double-stranded DNA bacteriophages.

Authors:  Stephen C Harvey
Journal:  J Struct Biol       Date:  2014-12-05       Impact factor: 2.867

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.