Literature DB >> 25728298

Old, new, and widely true: The bacteriophage T4 DNA packaging mechanism.

Lindsay W Black1.   

Abstract

DNA packaging into empty viral procapsids by ATP-driven motor proteins applies widely among viruses. Recent fluorescence studies of phage T4 reveal: 1) the small terminase subunit (TerS) synapses pac homologs by a twin ring mechanism to gauge DNA maturation and allow packaging by the large terminase subunit (TerL); 2) translocation of linear DNA is efficient by TerL acting alone; expansion of the procapsid is controlled by the portal-terminase assembly; 3) both ends of the packaged DNA are held at the portal, showing a loop of DNA is packaged; 4) transient spring-like compression of B form to A form-like DNA accompanies translocation; 5) the C-terminal domain of TerL is docked to the portal and moves toward it when stalled; 6) a portal bound resolvase can release stalled Y-DNA compression and allow translocation in vitro; and 7) ATP powered translocation on A form dsDNA is supported by recent hexameric helicase studies.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  A form DNA; DNA motors; DNA packaging; Helicase; Pac site; Terminase

Mesh:

Substances:

Year:  2015        PMID: 25728298      PMCID: PMC4424107          DOI: 10.1016/j.virol.2015.01.015

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  59 in total

1.  Structure of the bacteriophage phi29 DNA packaging motor.

Authors:  A A Simpson; Y Tao; P G Leiman; M O Badasso; Y He; P J Jardine; N H Olson; M C Morais; S Grimes; D L Anderson; T S Baker; M G Rossmann
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

2.  The high-resolution functional map of bacteriophage SPP1 portal protein.

Authors:  Anabela Isidro; Mário A Santos; Adriano O Henriques; Paulo Tavares
Journal:  Mol Microbiol       Date:  2004-02       Impact factor: 3.501

3.  Structure of p22 headful packaging nuclease.

Authors:  Ankoor Roy; Gino Cingolani
Journal:  J Biol Chem       Date:  2012-06-19       Impact factor: 5.157

Review 4.  DNA packaging and cutting by phage terminases: control in phage T4 by a synaptic mechanism.

Authors:  L W Black
Journal:  Bioessays       Date:  1995-12       Impact factor: 4.345

5.  A stable double-stranded DNA-ethidium homodimer complex: application to picogram fluorescence detection of DNA in agarose gels.

Authors:  A N Glazer; K Peck; R A Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  1990-05       Impact factor: 11.205

6.  The DNA translocating ATPase of bacteriophage T4 packaging motor.

Authors:  Kiran R Kondabagil; Zhihong Zhang; Venigalla B Rao
Journal:  J Mol Biol       Date:  2006-08-25       Impact factor: 5.469

7.  DNA packaging ATPase of bacteriophage T3.

Authors:  M Morita; M Tasaka; H Fujisawa
Journal:  Virology       Date:  1993-04       Impact factor: 3.616

8.  DNA packaging and the pathway of bacteriophage T4 head assembly.

Authors:  C L Hsiao; L W Black
Journal:  Proc Natl Acad Sci U S A       Date:  1977-09       Impact factor: 11.205

9.  The hexameric helicase DnaB adopts a nonplanar conformation during translocation.

Authors:  Ornchuma Itsathitphaisarn; Richard A Wing; William K Eliason; Jimin Wang; Thomas A Steitz
Journal:  Cell       Date:  2012-09-27       Impact factor: 41.582

10.  A viral packaging motor varies its DNA rotation and step size to preserve subunit coordination as the capsid fills.

Authors:  Shixin Liu; Gheorghe Chistol; Craig L Hetherington; Sara Tafoya; K Aathavan; Joerg Schnitzbauer; Shelley Grimes; Paul J Jardine; Carlos Bustamante
Journal:  Cell       Date:  2014-04-24       Impact factor: 41.582

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  35 in total

1.  Thermodynamic Interrogation of the Assembly of a Viral Genome Packaging Motor Complex.

Authors:  Teng-Chieh Yang; David Ortiz; Lyn'Al Nosaka; Gabriel C Lander; Carlos Enrique Catalano
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

Review 2.  Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism.

Authors:  Peixuan Guo; Hiroyuki Noji; Christopher M Yengo; Zhengyi Zhao; Ian Grainge
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-27       Impact factor: 11.056

3.  The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain.

Authors:  Brendan J Hilbert; Janelle A Hayes; Nicholas P Stone; Rui-Gang Xu; Brian A Kelch
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

4.  Physical and Functional Characterization of a Viral Genome Maturation Complex.

Authors:  Teng-Chieh Yang; David Ortiz; Qin Yang; Rolando W De Angelis; Saurarshi J Sanyal; Carlos E Catalano
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

5.  Phage-like packing structures with mean field sequence dependence.

Authors:  Christopher G Myers; B Montgomery Pettitt
Journal:  J Comput Chem       Date:  2017-03-27       Impact factor: 3.376

6.  DNA Conformational Changes Play a Force-Generating Role during Bacteriophage Genome Packaging.

Authors:  Kim A Sharp; Xiang-Jun Lu; Gino Cingolani; Stephen C Harvey
Journal:  Biophys J       Date:  2019-04-30       Impact factor: 4.033

Review 7.  Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.

Authors:  Venigalla B Rao; Michael Feiss
Journal:  Annu Rev Virol       Date:  2015-09-10       Impact factor: 10.431

8.  Walker-A Motif Acts to Coordinate ATP Hydrolysis with Motor Output in Viral DNA Packaging.

Authors:  Damian delToro; David Ortiz; Mariam Ordyan; Jean Sippy; Choon-Seok Oh; Nicholas Keller; Michael Feiss; Carlos E Catalano; Douglas E Smith
Journal:  J Mol Biol       Date:  2016-04-30       Impact factor: 5.469

9.  Functional Dissection of a Viral DNA Packaging Machine's Walker B Motif.

Authors:  Damian delToro; David Ortiz; Mariam Ordyan; Joshua Pajak; Jean Sippy; Alexis Catala; Choon-Seok Oh; Amber Vu; Gaurav Arya; Douglas E Smith; Carlos E Catalano; Michael Feiss
Journal:  J Mol Biol       Date:  2019-08-30       Impact factor: 5.469

Review 10.  Bacteriophages and phage-inspired nanocarriers for targeted delivery of therapeutic cargos.

Authors:  Mahdi Karimi; Hamed Mirshekari; Seyed Masoud Moosavi Basri; Sajad Bahrami; Mohsen Moghoofei; Michael R Hamblin
Journal:  Adv Drug Deliv Rev       Date:  2016-03-17       Impact factor: 15.470

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