Literature DB >> 24165678

Deciphering the functions and regulation of brain-enriched A-to-I RNA editing.

Jin Billy Li1, George M Church.   

Abstract

Adenosine-to-inosine (A-to-I) RNA editing, in which genomically encoded adenosine is changed to inosine in RNA, is catalyzed by adenosine deaminase acting on RNA (ADAR). This fine-tuning mechanism is critical during normal development and diseases, particularly in relation to brain functions. A-to-I RNA editing has also been hypothesized to be a driving force in human brain evolution. A large number of RNA editing sites have recently been identified, mostly as a result of the development of deep sequencing and bioinformatic analyses. Deciphering the functional consequences of RNA editing events is challenging, but emerging genome engineering approaches may expedite new discoveries. To understand how RNA editing is dynamically regulated, it is imperative to construct a spatiotemporal atlas at the species, tissue and cell levels. Future studies will need to identify the cis and trans regulatory factors that drive the selectivity and frequency of RNA editing. We anticipate that recent technological advancements will aid researchers in acquiring a much deeper understanding of the functions and regulation of RNA editing.

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Year:  2013        PMID: 24165678      PMCID: PMC4015515          DOI: 10.1038/nn.3539

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  50 in total

1.  Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2.

Authors:  M Higuchi; S Maas; F N Single; J Hartner; A Rozov; N Burnashev; D Feldmeyer; R Sprengel; P H Seeburg
Journal:  Nature       Date:  2000-07-06       Impact factor: 49.962

Review 2.  A-to-I RNA editing and human disease.

Authors:  Stefan Maas; Yukio Kawahara; Kristen M Tamburro; Kazuko Nishikura
Journal:  RNA Biol       Date:  2006-01-12       Impact factor: 4.652

3.  Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling.

Authors:  Florian A Steiner; Paul B Talbert; Sivakanthan Kasinathan; Roger B Deal; Steven Henikoff
Journal:  Genome Res       Date:  2012-01-04       Impact factor: 9.043

4.  Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma.

Authors:  Leilei Chen; Yan Li; Chi Ho Lin; Tim Hon Man Chan; Raymond Kwok Kei Chow; Yangyang Song; Ming Liu; Yun-Fei Yuan; Li Fu; Kar Lok Kong; Lihua Qi; Yan Li; Na Zhang; Amy Hin Yan Tong; Dora Lai-Wan Kwong; Kwan Man; Chung Mau Lo; Si Lok; Daniel G Tenen; Xin-Yuan Guan
Journal:  Nat Med       Date:  2013-01-06       Impact factor: 53.440

5.  Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates.

Authors:  Nurit Paz-Yaacov; Erez Y Levanon; Eviatar Nevo; Yaron Kinar; Alon Harmelin; Jasmine Jacob-Hirsch; Ninette Amariglio; Eli Eisenberg; Gideon Rechavi
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

Review 6.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

7.  Dysregulated editing of serotonin 2C receptor mRNAs results in energy dissipation and loss of fat mass.

Authors:  Yukio Kawahara; Adda Grimberg; Sarah Teegarden; Cedric Mombereau; Sui Liu; Tracy L Bale; Julie A Blendy; Kazuko Nishikura
Journal:  J Neurosci       Date:  2008-11-26       Impact factor: 6.167

Review 8.  ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.

Authors:  Thomas Gaj; Charles A Gersbach; Carlos F Barbas
Journal:  Trends Biotechnol       Date:  2013-05-09       Impact factor: 19.536

9.  Modulation of dADAR-dependent RNA editing by the Drosophila fragile X mental retardation protein.

Authors:  Balpreet Bhogal; James E Jepson; Yiannis A Savva; Anita S-R Pepper; Robert A Reenan; Thomas A Jongens
Journal:  Nat Neurosci       Date:  2011-10-30       Impact factor: 24.884

10.  Predicting sites of ADAR editing in double-stranded RNA.

Authors:  Julie M Eggington; Tom Greene; Brenda L Bass
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

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  72 in total

1.  In search of beneficial coding RNA editing.

Authors:  Guixia Xu; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2014-11-12       Impact factor: 16.240

Review 2.  Retrotransposons as regulators of gene expression.

Authors:  Reyad A Elbarbary; Bronwyn A Lucas; Lynne E Maquat
Journal:  Science       Date:  2016-02-11       Impact factor: 47.728

3.  RNA ligation in neurons by RtcB inhibits axon regeneration.

Authors:  Sara Guckian Kosmaczewski; Sung Min Han; Bingjie Han; Benjamin Irving Meyer; Huma S Baig; Wardah Athar; Alexander T Lin-Moore; Michael R Koelle; Marc Hammarlund
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

Review 4.  Novel RNA modifications in the nervous system: form and function.

Authors:  John S Satterlee; Maria Basanta-Sanchez; Sandra Blanco; Jin Billy Li; Kate Meyer; Jonathan Pollock; Ghazaleh Sadri-Vakili; Agnieszka Rybak-Wolf
Journal:  J Neurosci       Date:  2014-11-12       Impact factor: 6.167

5.  Diverse selective regimes shape genetic diversity at ADAR genes and at their coding targets.

Authors:  Diego Forni; Alessandra Mozzi; Chiara Pontremoli; Jacopo Vertemara; Uberto Pozzoli; Mara Biasin; Nereo Bresolin; Mario Clerici; Rachele Cagliani; Manuela Sironi
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

6.  Positive correlation between ADAR expression and its targets suggests a complex regulation mediated by RNA editing in the human brain.

Authors:  Noa Liscovitch; Lily Bazak; Erez Y Levanon; Gal Chechik
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 7.  Neuropathology of suicide: recent findings and future directions.

Authors:  P-E Lutz; N Mechawar; G Turecki
Journal:  Mol Psychiatry       Date:  2017-07-11       Impact factor: 15.992

Review 8.  Cardinal Epigenetic Role of non-coding Regulatory RNAs in Circadian Rhythm.

Authors:  Utpal Bhadra; Pradipta Patra; Manika Pal-Bhadra
Journal:  Mol Neurobiol       Date:  2017-05-17       Impact factor: 5.590

9.  Evolving insights into RNA modifications and their functional diversity in the brain.

Authors:  Sarah Nainar; Paul R Marshall; Christina R Tyler; Robert C Spitale; Timothy W Bredy
Journal:  Nat Neurosci       Date:  2016-09-27       Impact factor: 24.884

10.  Dynamic regulation of RNA editing in human brain development and disease.

Authors:  Taeyoung Hwang; Chul-Kee Park; Anthony K L Leung; Yuan Gao; Thomas M Hyde; Joel E Kleinman; Anandita Rajpurohit; Ran Tao; Joo Heon Shin; Daniel R Weinberger
Journal:  Nat Neurosci       Date:  2016-06-27       Impact factor: 24.884

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