Literature DB >> 22194009

Linking DNA replication to heterochromatin silencing and epigenetic inheritance.

Qing Li1, Zhiguo Zhang.   

Abstract

Chromatin is organized into distinct functional domains. During mitotic cell division, both genetic information encoded in DNA sequence and epigenetic information embedded in chromatin structure must be faithfully duplicated. The inheritance of epigenetic states is critical in maintaining the genome integrity and gene expression state. In this review, we will discuss recent progress on how proteins known to be involved in DNA replication and DNA replication-coupled nucleosome assembly impact on the inheritance and maintenance of heterochromatin, a tightly compact chromatin structure that silences gene transcription. As heterochromatin is important in regulating gene expression and maintaining genome stability, understanding how heterochromatin states are inherited during S phase of the cell cycle is of fundamental importance.

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Year:  2012        PMID: 22194009      PMCID: PMC3244654          DOI: 10.1093/abbs/gmr107

Source DB:  PubMed          Journal:  Acta Biochim Biophys Sin (Shanghai)        ISSN: 1672-9145            Impact factor:   3.848


  152 in total

1.  Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly.

Authors:  Mo Xu; Chengzu Long; Xiuzhen Chen; Chang Huang; She Chen; Bing Zhu
Journal:  Science       Date:  2010-04-02       Impact factor: 47.728

2.  Structural analysis of Rtt106p reveals a DNA binding role required for heterochromatin silencing.

Authors:  Yiwei Liu; Hongda Huang; Bo O Zhou; Shan-Shan Wang; Yingxia Hu; Xu Li; Jianping Liu; Jianye Zang; Liwen Niu; Jihui Wu; Jin-Qiu Zhou; Maikun Teng; Yunyu Shi
Journal:  J Biol Chem       Date:  2009-12-10       Impact factor: 5.157

Review 3.  Eukaryotic DNA replication control: lock and load, then fire.

Authors:  Dirk Remus; John F X Diffley
Journal:  Curr Opin Cell Biol       Date:  2009-09-18       Impact factor: 8.382

Review 4.  Histone variants--ancient wrap artists of the epigenome.

Authors:  Paul B Talbert; Steven Henikoff
Journal:  Nat Rev Mol Cell Biol       Date:  2010-03-03       Impact factor: 94.444

Review 5.  Chaperoning histones during DNA replication and repair.

Authors:  Monica Ransom; Briana K Dennehey; Jessica K Tyler
Journal:  Cell       Date:  2010-01-22       Impact factor: 41.582

6.  Protein complex of Drosophila ATRX/XNP and HP1a is required for the formation of pericentric beta-heterochromatin in vivo.

Authors:  Alexander V Emelyanov; Alexander Y Konev; Elena Vershilova; Dmitry V Fyodorov
Journal:  J Biol Chem       Date:  2010-02-13       Impact factor: 5.157

7.  Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.

Authors:  Elizabeth H Bayne; Sharon A White; Alexander Kagansky; Dominika A Bijos; Luis Sanchez-Pulido; Kwang-Lae Hoe; Dong-Uk Kim; Han-Oh Park; Chris P Ponting; Juri Rappsilber; Robin C Allshire
Journal:  Cell       Date:  2010-03-05       Impact factor: 41.582

Review 8.  Chromatin structure and the inheritance of epigenetic information.

Authors:  Raphaël Margueron; Danny Reinberg
Journal:  Nat Rev Genet       Date:  2010-04       Impact factor: 53.242

9.  Distinct factors control histone variant H3.3 localization at specific genomic regions.

Authors:  Aaron D Goldberg; Laura A Banaszynski; Kyung-Min Noh; Peter W Lewis; Simon J Elsaesser; Sonja Stadler; Scott Dewell; Martin Law; Xingyi Guo; Xuan Li; Duancheng Wen; Ariane Chapgier; Russell C DeKelver; Jeffrey C Miller; Ya-Li Lee; Elizabeth A Boydston; Michael C Holmes; Philip D Gregory; John M Greally; Shahin Rafii; Chingwen Yang; Peter J Scambler; David Garrick; Richard J Gibbons; Douglas R Higgs; Ileana M Cristea; Fyodor D Urnov; Deyou Zheng; C David Allis
Journal:  Cell       Date:  2010-03-05       Impact factor: 41.582

10.  The SNF2-family member Fun30 promotes gene silencing in heterochromatic loci.

Authors:  Ana Neves-Costa; W Ryan Will; Anna T Vetter; J Ross Miller; Patrick Varga-Weisz
Journal:  PLoS One       Date:  2009-12-01       Impact factor: 3.240

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  11 in total

Review 1.  Cdc6: a multi-functional molecular switch with critical role in carcinogenesis.

Authors:  Thodoris G Petrakis; Konstantinos Vougas; Vassilis G Gorgoulis
Journal:  Transcription       Date:  2012 May-Jun

2.  Dynamic regulation of histone H3K9 is linked to the switch between replication and transcription at the Dbf4 origin-promoter locus.

Authors:  Kathleen Kylie; Julia Romero; Indeewari K S Lindamulage; James Knockleby; Hoyun Lee
Journal:  Cell Cycle       Date:  2016-06-24       Impact factor: 4.534

3.  Interplay between histone H3 lysine 56 deacetylation and chromatin modifiers in response to DNA damage.

Authors:  Antoine Simoneau; Neda Delgoshaie; Ivana Celic; Junbiao Dai; Nebiyu Abshiru; Santiago Costantino; Pierre Thibault; Jef D Boeke; Alain Verreault; Hugo Wurtele
Journal:  Genetics       Date:  2015-03-18       Impact factor: 4.562

4.  Proliferating cell nuclear antigen (PCNA) contributes to the high-order structure and stability of heterochromatin in Saccharomyces cerevisiae.

Authors:  Xin Bi; Yue Ren; Morgan Kath
Journal:  Chromosome Res       Date:  2016-12-16       Impact factor: 5.239

Review 5.  Replication-Coupled Nucleosome Assembly in the Passage of Epigenetic Information and Cell Identity.

Authors:  Albert Serra-Cardona; Zhiguo Zhang
Journal:  Trends Biochem Sci       Date:  2017-12-29       Impact factor: 13.807

6.  Preservation of Epigenetic Memory During DNA Replication.

Authors:  Matthew Lowe; Reilly Hostager; Nobuaki Kikyo
Journal:  J Stem Cell Res Ther (Edmond)       Date:  2015-11-26

7.  Molecular mechanisms of eukaryotic origin initiation, replication fork progression, and chromatin maintenance.

Authors:  Zuanning Yuan; Huilin Li
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

8.  Association of ORCA/LRWD1 with repressive histone methyl transferases mediates heterochromatin organization.

Authors:  Sumanprava Giri; Supriya G Prasanth
Journal:  Nucleus       Date:  2016-01-14       Impact factor: 4.197

Review 9.  Epigenetics in Intestinal Epithelial Cell Renewal.

Authors:  Alireza Roostaee; Yannick D Benoit; Salah Boudjadi; Jean-François Beaulieu
Journal:  J Cell Physiol       Date:  2016-04-26       Impact factor: 6.384

10.  The Cac1 subunit of histone chaperone CAF-1 organizes CAF-1-H3/H4 architecture and tetramerizes histones.

Authors:  Wallace H Liu; Sarah C Roemer; Yeyun Zhou; Zih-Jie Shen; Briana K Dennehey; Jeremy L Balsbaugh; Jennifer C Liddle; Travis Nemkov; Natalie G Ahn; Kirk C Hansen; Jessica K Tyler; Mair Ea Churchill
Journal:  Elife       Date:  2016-09-30       Impact factor: 8.140

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