Literature DB >> 22156394

Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome.

Roland J Siezen1, Christof Francke, Bernadet Renckens, Jos Boekhorst, Michiel Wels, Michiel Kleerebezem, Sacha A F T van Hijum.   

Abstract

There is growing interest in the beneficial effects of Lactobacillus plantarum on human health. The genome of L. plantarum WCFS1, first sequenced in 2001, was resequenced using Solexa technology. We identified 116 nucleotide corrections and improved function prediction for nearly 1,200 proteins, with a focus on metabolic functions and cell surface-associated proteins.

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Year:  2012        PMID： 22156394      PMCID： PMC3256602          DOI： 10.1128/JB.06275-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  52 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

3.  The ERGO genome analysis and discovery system.

Authors:  Ross Overbeek; Niels Larsen; Theresa Walunas; Mark D'Souza; Gordon Pusch; Eugene Selkov; Konstantinos Liolios; Viktor Joukov; Denis Kaznadzey; Iain Anderson; Anamitra Bhattacharyya; Henry Burd; Warren Gardner; Paul Hanke; Vinayak Kapatral; Natalia Mikhailova; Olga Vasieva; Andrei Osterman; Veronika Vonstein; Michael Fonstein; Natalia Ivanova; Nikos Kyrpides
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  An Ergatis-based prokaryotic genome annotation web server.

Authors:  Chris Hemmerich; Aaron Buechlein; Ram Podicheti; Kashi V Revanna; Qunfeng Dong
Journal:  Bioinformatics       Date:  2010-03-01       Impact factor: 6.937

5.  Selection and characterization of mixed starter cultures for lactic acid fermentation of carrot, cabbage, beet and onion vegetable mixtures.

Authors:  N J Gardner; T Savard; P Obermeier; G Caldwell; C P Champagne
Journal:  Int J Food Microbiol       Date:  2001-03-20       Impact factor: 5.277

6.  Identification of genetic loci in Lactobacillus plantarum that modulate the immune response of dendritic cells using comparative genome hybridization.

Authors:  Marjolein Meijerink; Saskia van Hemert; Nico Taverne; Michiel Wels; Paul de Vos; Peter A Bron; Huub F Savelkoul; Jolanda van Bilsen; Michiel Kleerebezem; Jerry M Wells
Journal:  PLoS One       Date:  2010-05-13       Impact factor: 3.240

7.  Bacterial community structure and location in Stilton cheese.

Authors:  Danilo Ercolini; Philip J Hill; Christine E R Dodd
Journal:  Appl Environ Microbiol       Date:  2003-06       Impact factor: 4.792

8.  Complete genome sequence of Lactobacillus plantarum WCFS1.

Authors:  Michiel Kleerebezem; Jos Boekhorst; Richard van Kranenburg; Douwe Molenaar; Oscar P Kuipers; Rob Leer; Renato Tarchini; Sander A Peters; Hans M Sandbrink; Mark W E J Fiers; Willem Stiekema; René M Klein Lankhorst; Peter A Bron; Sally M Hoffer; Masja N Nierop Groot; Robert Kerkhoven; Maaike de Vries; Björn Ursing; Willem M de Vos; Roland J Siezen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-03       Impact factor: 11.205

9.  Microbial quality and direct PCR identification of lactic acid bacteria and nonpathogenic Staphylococci from artisanal low-acid sausages.

Authors:  T Aymerich; B Martín; M Garriga; M Hugas
Journal:  Appl Environ Microbiol       Date:  2003-08       Impact factor: 4.792

Review 10.  Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer.

Authors:  Roland J Siezen; Johan E T van Hylckama Vlieg
Journal:  Microb Cell Fact       Date:  2011-08-30       Impact factor: 5.328
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  49 in total

1.  Comparative genomic analysis of Lactobacillus plantarum ZJ316 reveals its genetic adaptation and potential probiotic profiles.

Authors:  Ping Li; Xuan Li; Qing Gu; Xiu-Yu Lou; Xiao-Mei Zhang; Da-Feng Song; Chen Zhang
Journal:  J Zhejiang Univ Sci B       Date:  2016-08       Impact factor: 3.066

2.  Complete genome sequencing of Lactobacillus plantarum CAUH2 reveals a novel plasmid pCAUH203 associated with oxidative stress tolerance.

Authors:  Zhengyuan Zhai; Yang Yang; Jiaojiao Wang; Guohong Wang; Fazheng Ren; Yanling Hao
Journal:  3 Biotech       Date:  2019-03-04       Impact factor: 2.406

3.  Immunogenic Properties of Lactobacillus plantarum Producing Surface-Displayed Mycobacterium tuberculosis Antigens.

Authors:  Katarzyna Kuczkowska; Charlotte R Kleiveland; Rajna Minic; Lars F Moen; Lise Øverland; Rannei Tjåland; Harald Carlsen; Tor Lea; Geir Mathiesen; Vincent G H Eijsink
Journal:  Appl Environ Microbiol       Date:  2016-12-30       Impact factor: 4.792

4.  An Inducible Operon Is Involved in Inulin Utilization in Lactobacillus plantarum Strains, as Revealed by Comparative Proteogenomics and Metabolic Profiling.

Authors:  Nirunya Buntin; Tipparat Hongpattarakere; Jarmo Ritari; François P Douillard; Lars Paulin; Sjef Boeren; Sudarshan A Shetty; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2016-12-30       Impact factor: 4.792

5.  Antibacterial activity of a cell wall hydrolase from Lactobacillus paracasei NRRL B-50314 produced by recombinant Bacillus megaterium.

Authors:  Siqing Liu; Joseph O Rich; Amber Anderson
Journal:  J Ind Microbiol Biotechnol       Date:  2014-12-23       Impact factor: 3.346

6.  Molecular Switch Controlling Expression of the Mannose-Specific Adhesin, Msa, in Lactobacillus plantarum.

Authors:  Bjørn Holst; Jacob Glenting; Kim Holmstrøm; Hans Israelsen; Astrid Vrang; Martin Antonsson; Siv Ahrné; Søren M Madsen
Journal:  Appl Environ Microbiol       Date:  2019-05-02       Impact factor: 4.792

7.  Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730).

Authors:  Lars Axelsson; Ida Rud; Kristine Naterstad; Hans Blom; Bernadet Renckens; Jos Boekhorst; Michiel Kleerebezem; Sacha van Hijum; Roland J Siezen
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

8.  Characterization of two virulent phages of Lactobacillus plantarum.

Authors:  Mariángeles Briggiler Marcó; Josiane E Garneau; Denise Tremblay; Andrea Quiberoni; Sylvain Moineau
Journal:  Appl Environ Microbiol       Date:  2012-10-05       Impact factor: 4.792

9.  Analytical combinations to evaluate the macromolecular composition of extracellular substances (ECS) from Lactobacillus plantarum cell culture media.

Authors:  Peio Elichiry-Ortiz; Pauline Maes; Stéphanie Weidmann; Dominique Champion; Christian Coelho
Journal:  Anal Bioanal Chem       Date:  2020-11-05       Impact factor: 4.142

10.  Impact of Lactobacillus plantarum sortase on target protein sorting, gastrointestinal persistence, and host immune response modulation.

Authors:  Daniela M Remus; Roger S Bongers; Marjolein Meijerink; Fabrizia Fusetti; Bert Poolman; Paul de Vos; Jerry M Wells; Michiel Kleerebezem; Peter A Bron
Journal:  J Bacteriol       Date:  2012-11-21       Impact factor: 3.490
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