Literature DB >> 11120685

Artemis: sequence visualization and annotation.

K Rutherford1, J Parkhill, J Crook, T Horsnell, P Rice, M A Rajandream, B Barrell.   

Abstract

SUMMARY: Artemis is a DNA sequence visualization and annotation tool that allows the results of any analysis or sets of analyses to be viewed in the context of the sequence and its six-frame translation. Artemis is especially useful in analysing the compact genomes of bacteria, archaea and lower eukaryotes, and will cope with sequences of any size from small genes to whole genomes. It is implemented in Java, and can be run on any suitable platform. Sequences and annotation can be read and written directly in EMBL, GenBank and GFF format. AVAILABITLTY: Artemis is available under the GNU General Public License from http://www.sanger.ac.uk/Software/Artemis

Mesh：

Year:  2000        PMID： 11120685     DOI： 10.1093/bioinformatics/16.10.944

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  1697 in total

1.  Gene2EST: a BLAST2 server for searching expressed sequence tag (EST) databases with eukaryotic gene-sized queries.

Authors:  C Gemünd; C Ramu; B Altenberg-Greulich; T J Gibson
Journal:  Nucleic Acids Res       Date:  2001-03-15       Impact factor: 16.971

2.  Genome-wide analysis of core cell cycle genes in Arabidopsis.

Authors:  Klaas Vandepoele; Jeroen Raes; Lieven De Veylder; Pierre Rouzé; Stephane Rombauts; Dirk Inzé
Journal:  Plant Cell       Date:  2002-04       Impact factor: 11.277

3.  The contribution of exon-skipping events on chromosome 22 to protein coding diversity.

Authors:  W A Hide; V N Babenko; P A van Heusden; C Seoighe; J F Kelso
Journal:  Genome Res       Date:  2001-11       Impact factor: 9.043

4.  GenDB--an open source genome annotation system for prokaryote genomes.

Authors:  Folker Meyer; Alexander Goesmann; Alice C McHardy; Daniela Bartels; Thomas Bekel; Jörn Clausen; Jörn Kalinowski; Burkhard Linke; Oliver Rupp; Robert Giegerich; Alfred Pühler
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

5.  The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice.

Authors:  Klaas Vandepoele; Yvan Saeys; Cedric Simillion; Jeroen Raes; Yves Van De Peer
Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

6.  Genetic structure and distribution of four pathogenicity islands (PAI I(536) to PAI IV(536)) of uropathogenic Escherichia coli strain 536.

Authors:  Ulrich Dobrindt; Gabriele Blum-Oehler; Gabor Nagy; György Schneider; André Johann; Gerhard Gottschalk; Jörg Hacker
Journal:  Infect Immun       Date:  2002-11       Impact factor: 3.441

7.  A genetic model for the female sterility barrier between Asian and African cultivated rice species.

Authors:  Andrea Garavito; Romain Guyot; Jaime Lozano; Frédérick Gavory; Sylvie Samain; Olivier Panaud; Joe Tohme; Alain Ghesquière; Mathias Lorieux
Journal:  Genetics       Date:  2010-05-10       Impact factor: 4.562

8.  Genome sequence and phenotypic characterization of Caulobacter segnis.

Authors:  Sagar Patel; Brock Fletcher; Derrick C Scott; Bert Ely
Journal:  Curr Microbiol       Date:  2014-11-15       Impact factor: 2.188

9.  Insights into the genome and proteome of Sphingomonas paucimobilis strain 20006FA involved in the regulation of polycyclic aromatic hydrocarbon degradation.

Authors:  M Macchi; M Martinez; R M Neme Tauil; M P Valacco; I S Morelli; B M Coppotelli
Journal:  World J Microbiol Biotechnol       Date:  2017-12-06       Impact factor: 3.312

10.  Biosynthetic gene cluster of the herbicide phosphinothricin tripeptide from Streptomyces viridochromogenes Tü494.

Authors:  Dirk Schwartz; Susanne Berger; Eva Heinzelmann; Konstanze Muschko; Kathrin Welzel; Wolfgang Wohlleben
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.