Literature DB >> 20194626

An Ergatis-based prokaryotic genome annotation web server.

Chris Hemmerich1, Aaron Buechlein, Ram Podicheti, Kashi V Revanna, Qunfeng Dong.   

Abstract

SUMMARY: Ergatis is a flexible workflow management system for designing and executing complex bioinformatics pipelines. However, its complexity restricts its usage to only highly skilled bioinformaticians. We have developed a web-based prokaryotic genome annotation server, Integrative Services for Genomics Analysis (ISGA), which builds upon the Ergatis workflow system, integrates other dynamic analysis tools and provides intuitive web interfaces for biologists to customize and execute their own annotation pipelines. ISGA is designed to be installed at genomics core facilities and be used directly by biologists. AVAILABILITY: ISGA is accessible at http://isga.cgb.indiana.edu/ and the system is also freely available for local installation.

Mesh：

Year:  2010        PMID： 20194626     DOI： 10.1093/bioinformatics/btq090

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  76 in total

1.  GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis.

Authors:  Vikas R Pejaver; Jaehyun An; Sungmin Rhee; Ankita Bhan; Jeong-Hyeon Choi; Boshu Liu; Heewook Lee; Pamela J Brown; David Kysela; Yves V Brun; Sun Kim
Journal:  Bioinformatics       Date:  2012-04-11       Impact factor: 6.937

2.  Draft genome sequence of Enterococcus mundtii CRL1656.

Authors:  Christian Magni; Carolina Espeche; Guillermo D Repizo; Lucila Saavedra; Cristian A Suárez; Víctor S Blancato; Martín Espariz; Luis Esteban; Raúl R Raya; Graciela Font de Valdez; Graciela Vignolo; Fernanda Mozzi; María Pía Taranto; Elvira M Hebert; María Elena Nader-Macías; Fernando Sesma
Journal:  J Bacteriol       Date:  2012-01       Impact factor: 3.490

3.  Complete genome sequence of Salmonella enterica subsp. enterica serovar Typhi P-stx-12.

Authors:  Su Yean Ong; Chandra Bhan Pratap; Xuehua Wan; Shaobin Hou; Ahmad Yamin Abdul Rahman; Jennifer A Saito; Gopal Nath; Maqsudul Alam
Journal:  J Bacteriol       Date:  2012-04       Impact factor: 3.490

4.  The complete nucleotide sequence of the carbapenem resistance-conferring conjugative plasmid pLD209 from a Pseudomonas putida clinical strain reveals a chimeric design formed by modules derived from both environmental and clinical bacteria.

Authors:  Patricia M Marchiaro; Luciano Brambilla; Jorgelina Morán-Barrio; Santiago Revale; Fernando Pasteran; Alejandro J Vila; Alejandro M Viale; Adriana S Limansky
Journal:  Antimicrob Agents Chemother       Date:  2014-01-06       Impact factor: 5.191

5.  Small but sufficient: the Rhodococcus phage RRH1 has the smallest known Siphoviridae genome at 14.2 kilobases.

Authors:  Steve Petrovski; Zoe A Dyson; Robert J Seviour; Daniel Tillett
Journal:  J Virol       Date:  2011-10-19       Impact factor: 5.103

6.  Complete genome sequence of Melissococcus plutonius ATCC 35311.

Authors:  Kayo Okumura; Rie Arai; Masatoshi Okura; Teruo Kirikae; Daisuke Takamatsu; Makoto Osaki; Tohru Miyoshi-Akiyama
Journal:  J Bacteriol       Date:  2011-05-27       Impact factor: 3.490

7.  Genome sequences of eight morphologically diverse Alphaproteobacteria.

Authors:  Pamela J B Brown; David T Kysela; Aaron Buechlein; Chris Hemmerich; Yves V Brun
Journal:  J Bacteriol       Date:  2011-06-24       Impact factor: 3.490

8.  Genomic analysis of Acinetobacter baumannii A118 by comparison of optical maps: identification of structures related to its susceptibility phenotype.

Authors:  Maria Soledad Ramirez; Mark D Adams; Robert A Bonomo; Daniela Centrón; Marcelo E Tolmasky
Journal:  Antimicrob Agents Chemother       Date:  2011-01-31       Impact factor: 5.191

9.  Genome sequence of Sphingomonas sp. S17, isolated from an alkaline, hyperarsenic, and hypersaline volcano-associated lake at high altitude in the Argentinean Puna.

Authors:  Maria Eugenia Farias; Santiago Revale; Estefania Mancini; Omar Ordoñez; Adrian Turjanski; Néstor Cortez; Martin P Vazquez
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

10.  Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes.

Authors:  Theresa J Smith; Karen K Hill; Gary Xie; Brian T Foley; Charles H D Williamson; Jeffrey T Foster; Shannon L Johnson; Olga Chertkov; Hazuki Teshima; Henry S Gibbons; Lauren A Johnsky; Mark A Karavis; Leonard A Smith
Journal:  Infect Genet Evol       Date:  2014-12-06       Impact factor: 3.342
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