Literature DB >> 22140274

HPAM: Hirshfeld Partitioned Atomic Multipoles.

Dennis M Elking1, Lalith Perera, Lee G Pedersen.   

Abstract

An implementation of the Hirshfeld (HD) and Hirshfeld-Iterated (HD-I) atomic charge density partitioning schemes is described. Atomic charges and atomic multipoles are calculated from the HD and HD-I atomic charge densities for arbitrary atomic multipole rank l(max) on molecules of arbitrary shape and size. The HD and HD-I atomic charges/multipoles are tested by comparing molecular multipole moments and the electrostatic potential (ESP) surrounding a molecule with their reference ab initio values. In general, the HD-I atomic charges/multipoles are found to better reproduce ab initio electrostatic properties over HD atomic charges/multipoles. A systematic increase in precision for reproducing ab initio electrostatic properties is demonstrated by increasing the atomic multipole rank from l(max) = 0 (atomic charges) to l(max) = 4 (atomic hexadecapoles). Both HD and HD-I atomic multipoles up to rank l(max) are shown to exactly reproduce ab initio molecular multipole moments of rank L for L ≤ l(max). In addition, molecular dipole moments calculated by HD, HD-I, and ChelpG atomic charges only (l(max) = 0) are compared with reference ab initio values. Significant errors in reproducing ab initio molecular dipole moments are found if only HD or HD-I atomic charges used.

Entities:  

Year:  2012        PMID: 22140274      PMCID: PMC3225920          DOI: 10.1016/j.cpc.2011.10.003

Source DB:  PubMed          Journal:  Comput Phys Commun        ISSN: 0010-4655            Impact factor:   4.390


  14 in total

1.  OPEP: a tool for the optimal partitioning of electric properties.

Authors:  János G Angyán; Christophe Chipot; François Dehez; Christof Hättig; Georg Jansen; Claude Millot
Journal:  J Comput Chem       Date:  2003-06       Impact factor: 3.376

2.  Distributed Multipole Analysis:  Stability for Large Basis Sets.

Authors:  Anthony J Stone
Journal:  J Chem Theory Comput       Date:  2005-11       Impact factor: 6.006

3.  Electrostatic Potentials from Self-Consistent Hirshfeld Atomic Charges.

Authors:  Sofie Van Damme; Patrick Bultinck; Stijn Fias
Journal:  J Chem Theory Comput       Date:  2009-02-10       Impact factor: 6.006

4.  Fitting Molecular Electrostatic Potentials from Quantum Mechanical Calculations.

Authors:  Hao Hu; Zhenyu Lu; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2007-05       Impact factor: 6.006

5.  Critical analysis and extension of the Hirshfeld atoms in molecules.

Authors:  Patrick Bultinck; Christian Van Alsenoy; Paul W Ayers; Ramon Carbó-Dorca
Journal:  J Chem Phys       Date:  2007-04-14       Impact factor: 3.488

Review 6.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

7.  Atomic charge densities generated using an iterative stockholder procedure.

Authors:  Timothy C Lillestolen; Richard J Wheatley
Journal:  J Chem Phys       Date:  2009-10-14       Impact factor: 3.488

8.  Atomic forces for geometry-dependent point multipole and gaussian multipole models.

Authors:  Dennis M Elking; Lalith Perera; Robert Duke; Thomas Darden; Lee G Pedersen
Journal:  J Comput Chem       Date:  2010-11-30       Impact factor: 3.376

9.  A Hirshfeld-I interpretation of the charge distribution, dipole and quadrupole moments of the halogenated acetylenes FCCH, ClCCH, BrCCH, and ICCH.

Authors:  James F Harrison
Journal:  J Chem Phys       Date:  2010-12-07       Impact factor: 3.488

10.  CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations.

Authors:  Sandeep Patel; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-01-15       Impact factor: 3.376

View more
  3 in total

1.  Analysis and visualization of energy densities. II. Insights from linear-response time-dependent density functional theory calculations.

Authors:  Zheng Pei; Junjie Yang; Jingheng Deng; Yuezhi Mao; Qin Wu; Zhibo Yang; Bin Wang; Christine M Aikens; Wanzhen Liang; Yihan Shao
Journal:  Phys Chem Chem Phys       Date:  2020-12-07       Impact factor: 3.676

2.  Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions.

Authors:  Ye Mei; Andrew C Simmonett; Frank C Pickard; Robert A DiStasio; Bernard R Brooks; Yihan Shao
Journal:  J Phys Chem A       Date:  2015-05-18       Impact factor: 2.781

3.  Hydration Free Energies in the FreeSolv Database Calculated with Polarized Iterative Hirshfeld Charges.

Authors:  Maximiliano Riquelme; Alejandro Lara; David L Mobley; Toon Verstraelen; Adelio R Matamala; Esteban Vöhringer-Martinez
Journal:  J Chem Inf Model       Date:  2018-08-31       Impact factor: 4.956

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.