Literature DB >> 25945749

Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions.

Ye Mei1,2,3, Andrew C Simmonett3, Frank C Pickard3, Robert A DiStasio4, Bernard R Brooks3, Yihan Shao5.   

Abstract

In order to carry out a detailed analysis of the molecular static polarizability, which is the response of the molecule to a uniform external electric field, the molecular polarizability was computed using the finite-difference method for 21 small molecules, using density functional theory. Within nine charge population schemes (Löwdin, Mulliken, Becke, Hirshfeld, CM5, Hirshfeld-I, NPA, CHELPG, MK-ESP) in common use, the charge fluctuation contribution is found to dominate the molecular polarizability, with its ratio ranging from 59.9% with the Hirshfeld or CM5 scheme to 96.2% with the Mulliken scheme. The Hirshfeld-I scheme is also used to compute the other contribution to the molecular polarizability coming from the induced atomic dipoles, and the atomic polarizabilities in eight small molecules and water pentamer are found to be highly anisotropic for most atoms. Overall, the results suggest that (a) more emphasis probably should be placed on the charge fluctuation terms in future polarizable force field development and (b) an anisotropic polarizability might be more suitable than an isotropic one in polarizable force fields based entirely or partially on the induced atomic dipoles.

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Year:  2015        PMID: 25945749      PMCID: PMC4521410          DOI: 10.1021/acs.jpca.5b03159

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  78 in total

1.  A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.

Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

Review 2.  Accounting for electronic polarization in non-polarizable force fields.

Authors:  Igor Leontyev; Alexei Stuchebrukhov
Journal:  Phys Chem Chem Phys       Date:  2011-01-07       Impact factor: 3.676

3.  An Extension of the Hirshfeld Method to Open Shell Systems Using Fractional Occupations.

Authors:  D Geldof; A Krishtal; F Blockhuys; C Van Alsenoy
Journal:  J Chem Theory Comput       Date:  2011-04-20       Impact factor: 6.006

4.  Atomic Level Anisotropy in the Electrostatic Modeling of Lone Pairs for a Polarizable Force Field Based on the Classical Drude Oscillator.

Authors:  Edward Harder; Victor M Anisimov; Igor V Vorobyov; Pedro E M Lopes; Sergei Y Noskov; Alexander D MacKerell; Benoît Roux
Journal:  J Chem Theory Comput       Date:  2006-11       Impact factor: 6.006

5.  Critical analysis and extension of the Hirshfeld atoms in molecules.

Authors:  Patrick Bultinck; Christian Van Alsenoy; Paul W Ayers; Ramon Carbó-Dorca
Journal:  J Chem Phys       Date:  2007-04-14       Impact factor: 3.488

6.  Molecule-specific determination of atomic polarizabilities with the polarizable atomic multipole model.

Authors:  Hyun Woo Kim; Young Min Rhee
Journal:  J Comput Chem       Date:  2012-05-08       Impact factor: 3.376

7.  Derivation of fixed partial charges for amino acids accommodating a specific water model and implicit polarization.

Authors:  David S Cerutti; Julia E Rice; William C Swope; David A Case
Journal:  J Phys Chem B       Date:  2013-02-18       Impact factor: 2.991

8.  Interfacing ab initio Quantum Mechanical Method with Classical Drude Osillator Polarizable Model for Molecular Dynamics Simulation of Chemical Reactions.

Authors:  Zhenyu Lu; Yingkai Zhang
Journal:  J Chem Theory Comput       Date:  2008       Impact factor: 6.006

9.  The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.

Authors:  Yue Shi; Zhen Xia; Jiajing Zhang; Robert Best; Chuanjie Wu; Jay W Ponder; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2013       Impact factor: 6.006

10.  Many-Body Convergence of the Electrostatic Properties of Water.

Authors:  Gregory R Medders; Francesco Paesani
Journal:  J Chem Theory Comput       Date:  2013-10-01       Impact factor: 6.006

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  6 in total

1.  An Estimation of Hybrid Quantum Mechanical Molecular Mechanical Polarization Energies for Small Molecules Using Polarizable Force-Field Approaches.

Authors:  Jing Huang; Ye Mei; Gerhard König; Andrew C Simmonett; Frank C Pickard; Qin Wu; Lee-Ping Wang; Alexander D MacKerell; Bernard R Brooks; Yihan Shao
Journal:  J Chem Theory Comput       Date:  2017-01-24       Impact factor: 6.006

2.  On the accuracy of population analyses based on fitted densities.

Authors:  Aurélien de la Lande; Carine Clavaguéra; Andreas Köster
Journal:  J Mol Model       Date:  2017-03-02       Impact factor: 1.810

3.  Analysis and visualization of energy densities. II. Insights from linear-response time-dependent density functional theory calculations.

Authors:  Zheng Pei; Junjie Yang; Jingheng Deng; Yuezhi Mao; Qin Wu; Zhibo Yang; Bin Wang; Christine M Aikens; Wanzhen Liang; Yihan Shao
Journal:  Phys Chem Chem Phys       Date:  2020-12-07       Impact factor: 3.676

4.  Data-Driven Mapping of Gas-Phase Quantum Calculations to General Force Field Lennard-Jones Parameters.

Authors:  Sophie M Kantonen; Hari S Muddana; Michael Schauperl; Niel M Henriksen; Lee-Ping Wang; Michael K Gilson
Journal:  J Chem Theory Comput       Date:  2020-01-17       Impact factor: 6.006

Review 5.  Thermodynamics and Kinetics of Drug-Target Binding by Molecular Simulation.

Authors:  Sergio Decherchi; Andrea Cavalli
Journal:  Chem Rev       Date:  2020-10-02       Impact factor: 60.622

Review 6.  Current Trends in Computational Quantum Chemistry Studies on Antioxidant Radical Scavenging Activity.

Authors:  Maciej Spiegel
Journal:  J Chem Inf Model       Date:  2022-04-18       Impact factor: 6.162

  6 in total

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