Literature DB >> 26627419

Fitting Molecular Electrostatic Potentials from Quantum Mechanical Calculations.

Hao Hu1, Zhenyu Lu1, Weitao Yang1.   

Abstract

We develop here a new method to fit the molecular electrostatic potentials obtained in quantum mechanical calculations to a set of classical electrostatic multipoles, usually point charges located at atomic positions. We define an object function of fitting as an integration of the difference of electrostatic potentials in the entire 3-dimensional physical space. The object function is thus rotationally invariant with respect to the molecular orientation and varies smoothly with respect to molecular geometric fluctuations. Compared with commonly employed methods such as the Merz-Singh-Kollman and CHELPG schemes, this new method, while possessing comparable accuracy, shows greatly improved numerical stability with respect to the molecular positions and geometries. The method can be used in the fitting of electrostatic potentials for the molecular mechanics force fields and also can be applied to the calculation of electrostatic polarizabilites of molecular or atomic systems.

Year:  2007        PMID: 26627419     DOI: 10.1021/ct600295n

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  27 in total

1.  HPAM: Hirshfeld Partitioned Atomic Multipoles.

Authors:  Dennis M Elking; Lalith Perera; Lee G Pedersen
Journal:  Comput Phys Commun       Date:  2012-02-01       Impact factor: 4.390

2.  Differential geometry based solvation model. III. Quantum formulation.

Authors:  Zhan Chen; Guo-Wei Wei
Journal:  J Chem Phys       Date:  2011-11-21       Impact factor: 3.488

3.  An Estimation of Hybrid Quantum Mechanical Molecular Mechanical Polarization Energies for Small Molecules Using Polarizable Force-Field Approaches.

Authors:  Jing Huang; Ye Mei; Gerhard König; Andrew C Simmonett; Frank C Pickard; Qin Wu; Lee-Ping Wang; Alexander D MacKerell; Bernard R Brooks; Yihan Shao
Journal:  J Chem Theory Comput       Date:  2017-01-24       Impact factor: 6.006

4.  Numerical fitting of molecular properties to Hermite Gaussians.

Authors:  G Andrés Cisneros; Dennis Elking; Jean-Philip Piquemal; Thomas A Darden
Journal:  J Phys Chem A       Date:  2007-11-01       Impact factor: 2.781

Review 5.  Classical electrostatics for biomolecular simulations.

Authors:  G Andrés Cisneros; Mikko Karttunen; Pengyu Ren; Celeste Sagui
Journal:  Chem Rev       Date:  2013-08-27       Impact factor: 60.622

Review 6.  Free energies of chemical reactions in solution and in enzymes with ab initio quantum mechanics/molecular mechanics methods.

Authors:  Hao Hu; Weitao Yang
Journal:  Annu Rev Phys Chem       Date:  2008       Impact factor: 12.703

7.  Improved parameterization of interatomic potentials for rare gas dimers with density-based energy decomposition analysis.

Authors:  Nengjie Zhou; Zhenyu Lu; Qin Wu; Yingkai Zhang
Journal:  J Chem Phys       Date:  2014-06-07       Impact factor: 3.488

8.  Determining polarizable force fields with electrostatic potentials from quantum mechanical linear response theory.

Authors:  Hao Wang; Weitao Yang
Journal:  J Chem Phys       Date:  2016-06-14       Impact factor: 3.488

9.  Analysis and visualization of energy densities. II. Insights from linear-response time-dependent density functional theory calculations.

Authors:  Zheng Pei; Junjie Yang; Jingheng Deng; Yuezhi Mao; Qin Wu; Zhibo Yang; Bin Wang; Christine M Aikens; Wanzhen Liang; Yihan Shao
Journal:  Phys Chem Chem Phys       Date:  2020-12-07       Impact factor: 3.676

10.  Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions.

Authors:  Ye Mei; Andrew C Simmonett; Frank C Pickard; Robert A DiStasio; Bernard R Brooks; Yihan Shao
Journal:  J Phys Chem A       Date:  2015-05-18       Impact factor: 2.781

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