Literature DB >> 22139160

Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the grapevine Vitis vinifera.

Sarah C Atkinson1, Con Dogovski, Janet Newman, Renwick C J Dobson, Matthew A Perugini.   

Abstract

Dihydrodipicolinate synthase (DHDPS) catalyses the first committed step of the lysine-biosynthesis pathway in bacteria, plants and some fungi. This study describes the cloning, expression, purification and crystallization of DHDPS from the grapevine Vitis vinifera (Vv-DHDPS). Following in-drop cleavage of the hexahistidine tag, cocrystals of Vv-DHDPS with the substrate pyruvate were grown in 0.1 M Bis-Tris propane pH 8.2, 0.2 M sodium bromide, 20%(w/v) PEG 3350. X-ray diffraction data in space group P1 at a resolution of 2.2 Å are presented. Preliminary diffraction data analysis indicated the presence of eight molecules per asymmetric unit (V(M) = 2.55 Å(3) Da(-1), 52% solvent content). The pending crystal structure of Vv-DHDPS will provide insight into the molecular evolution in quaternary structure of DHDPS enzymes.

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Year:  2011        PMID: 22139160      PMCID: PMC3232133          DOI: 10.1107/S1744309111038395

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  55 in total

1.  Towards rationalization of crystallization screening for small- to medium-sized academic laboratories: the PACT/JCSG+ strategy.

Authors:  Janet Newman; David Egan; Thomas S Walter; Ran Meged; Ian Berry; Marouane Ben Jelloul; Joel L Sussman; David I Stuart; Anastassis Perrakis
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-09-28

2.  Federated repositories of X-ray diffraction images.

Authors:  Steve Androulakis; Jason Schmidberger; Mark A Bate; Ross DeGori; Anthony Beitz; Cyrus Keong; Bob Cameron; Sheena McGowan; Corrine J Porter; Andrew Harrison; Jane Hunter; Jennifer L Martin; Bostjan Kobe; Renwick C J Dobson; Michael W Parker; James C Whisstock; Joan Gray; Andrew Treloar; David Groenewegen; Neil Dickson; Ashley M Buckle
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-06-18

3.  The crystal structures of native and (S)-lysine-bound dihydrodipicolinate synthase from Escherichia coli with improved resolution show new features of biological significance.

Authors:  Renwick C J Dobson; Michael D W Griffin; Geoffrey B Jameson; Juliet A Gerrard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-07-20

4.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

5.  Cloning and characterisation of dihydrodipicolinate synthase from the pathogen Neisseria meningitidis.

Authors:  Sean R A Devenish; Frances H A Huisman; Emily J Parker; Andrea T Hadfield; Juliet A Gerrard
Journal:  Biochim Biophys Acta       Date:  2009-02-21

6.  Conformationally constrained diketopimelic acid analogues as inhibitors of dihydrodipicolinate synthase.

Authors:  Berin A Boughton; Renwick C J Dobson; Juliet A Gerrard; Craig A Hutton
Journal:  Bioorg Med Chem Lett       Date:  2007-12-03       Impact factor: 2.823

7.  Expression, purification, crystallization and preliminary X-ray diffraction analysis of dihydrodipicolinate synthase from Bacillus anthracis in the presence of pyruvate.

Authors:  Jarrod E Voss; Stephen W Scally; Nicole L Taylor; Con Dogovski; Malcolm R Alderton; Craig A Hutton; Juliet A Gerrard; Michael W Parker; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-31

Review 8.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

9.  In situ proteolysis to generate crystals for structure determination: an update.

Authors:  Amy Wernimont; Aled Edwards
Journal:  PLoS One       Date:  2009-04-07       Impact factor: 3.240

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  6 in total

1.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from Agrobacterium tumefaciens.

Authors:  Sarah C Atkinson; Con Dogovski; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-08-30

Review 2.  Molecular evolution of an oligomeric biocatalyst functioning in lysine biosynthesis.

Authors:  Tatiana P Soares da Costa; Belinda M Abbott; Anthony R Gendall; Santosh Panjikar; Matthew A Perugini
Journal:  Biophys Rev       Date:  2017-12-05

3.  The Hidden Potential of High-Throughput RNA-Seq Re-Analysis, a Case Study for DHDPS, Key Enzyme of the Aspartate-Derived Lysine Biosynthesis Pathway and Its Role in Abiotic and Biotic Stress Responses in Soybean.

Authors:  Raphaël Kiekens; Ramon de Koning; Mary Esther Muyoka Toili; Geert Angenon
Journal:  Plants (Basel)       Date:  2022-07-01

4.  Structural, kinetic and computational investigation of Vitis vinifera DHDPS reveals new insight into the mechanism of lysine-mediated allosteric inhibition.

Authors:  Sarah C Atkinson; Con Dogovski; Matthew T Downton; Peter E Czabotar; Renwick C J Dobson; Juliet A Gerrard; John Wagner; Matthew A Perugini
Journal:  Plant Mol Biol       Date:  2013-01-26       Impact factor: 4.076

5.  Crystal, solution and in silico structural studies of dihydrodipicolinate synthase from the common grapevine.

Authors:  Sarah C Atkinson; Con Dogovski; Matthew T Downton; F Grant Pearce; Cyril F Reboul; Ashley M Buckle; Juliet A Gerrard; Renwick C J Dobson; John Wagner; Matthew A Perugini
Journal:  PLoS One       Date:  2012-06-25       Impact factor: 3.240

6.  Structure and Function of Cyanobacterial DHDPS and DHDPR.

Authors:  Janni B Christensen; T P Soares da Costa; Pierre Faou; F Grant Pearce; Santosh Panjikar; Matthew A Perugini
Journal:  Sci Rep       Date:  2016-11-15       Impact factor: 4.379

  6 in total

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