Literature DB >> 19194017

Expression, purification, crystallization and preliminary X-ray diffraction analysis of dihydrodipicolinate synthase from Bacillus anthracis in the presence of pyruvate.

Jarrod E Voss1, Stephen W Scally, Nicole L Taylor, Con Dogovski, Malcolm R Alderton, Craig A Hutton, Juliet A Gerrard, Michael W Parker, Renwick C J Dobson, Matthew A Perugini.   

Abstract

Dihydrodipicolinate synthase (DHDPS) catalyses the first committed step in the lysine-biosynthesis pathway in bacteria, plants and some fungi. In this study, the expression of DHDPS from Bacillus anthracis (Ba-DHDPS) and the purification of the recombinant enzyme in the absence and presence of the substrate pyruvate are described. It is shown that DHDPS from B. anthracis purified in the presence of pyruvate yields greater amounts of recombinant enzyme with more than 20-fold greater specific activity compared with the enzyme purified in the absence of substrate. It was therefore sought to crystallize Ba-DHDPS in the presence of the substrate. Pyruvate was soaked into crystals of Ba-DHDPS prepared in 0.2 M sodium fluoride, 20%(w/v) PEG 3350 and 0.1 M bis-tris propane pH 8.0. Preliminary X-ray diffraction data of the recombinant enzyme soaked with pyruvate at a resolution of 2.15 A are presented. The pending crystal structure of the pyruvate-bound form of Ba-DHDPS will provide insight into the function and stability of this essential bacterial enzyme.

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Year:  2009        PMID: 19194017      PMCID: PMC2635873          DOI: 10.1107/S1744309109000670

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

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Authors:  Timothy M McPhillips; Scott E McPhillips; Hsiu-Ju Chiu; Aina E Cohen; Ashley M Deacon; Paul J Ellis; Elspeth Garman; Ana Gonzalez; Nicholas K Sauter; R Paul Phizackerley; S Michael Soltis; Peter Kuhn
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

2.  Crystal structure and kinetic study of dihydrodipicolinate synthase from Mycobacterium tuberculosis.

Authors:  Georgia Kefala; Genevieve L Evans; Michael D W Griffin; Sean R A Devenish; F Grant Pearce; Matthew A Perugini; Juliet A Gerrard; Manfred S Weiss; Renwick C J Dobson
Journal:  Biochem J       Date:  2008-04-15       Impact factor: 3.857

Review 3.  Inhibition of lysine biosynthesis: an evolving antibiotic strategy.

Authors:  Craig A Hutton; Matthew A Perugini; Juliet A Gerrard
Journal:  Mol Biosyst       Date:  2007-05-23

4.  The crystal structures of native and (S)-lysine-bound dihydrodipicolinate synthase from Escherichia coli with improved resolution show new features of biological significance.

Authors:  Renwick C J Dobson; Michael D W Griffin; Geoffrey B Jameson; Juliet A Gerrard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-07-20

5.  Purification and characterization of dihydrodipicolinate synthase from pea.

Authors:  C Dereppe; G Bold; O Ghisalba; E Ebert; H P Schär
Journal:  Plant Physiol       Date:  1992-03       Impact factor: 8.340

6.  Reaction mechanism of Escherichia coli dihydrodipicolinate synthase investigated by X-ray crystallography and NMR spectroscopy.

Authors:  S Blickling; C Renner; B Laber; H D Pohlenz; T A Holak; R Huber
Journal:  Biochemistry       Date:  1997-01-07       Impact factor: 3.162

7.  Structural and functional characterization of Staphylococcus aureus dihydrodipicolinate synthase.

Authors:  Tavarekere S Girish; Eshita Sharma; B Gopal
Journal:  FEBS Lett       Date:  2008-07-29       Impact factor: 4.124

8.  Escherichia coli dihydrodipicolinate synthase. Identification of the active site and crystallization.

Authors:  B Laber; F X Gomis-Rüth; M J Romão; R Huber
Journal:  Biochem J       Date:  1992-12-01       Impact factor: 3.857

9.  Regulation of enzymes of lysine biosynthesis in Corynebacterium glutamicum.

Authors:  J Cremer; C Treptow; L Eggeling; H Sahm
Journal:  J Gen Microbiol       Date:  1988-12

10.  Solving structures of protein complexes by molecular replacement with Phaser.

Authors:  Airlie J McCoy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-12-13
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  8 in total

1.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the grapevine Vitis vinifera.

Authors:  Sarah C Atkinson; Con Dogovski; Janet Newman; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

2.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the psychrophile Shewanella benthica.

Authors:  Jacinta M Wubben; Con Dogovski; Renwick C J Dobson; Rachel Codd; Juliet A Gerrard; Michael W Parker; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-29

3.  Cloning, expression and crystallization of dihydrodipicolinate reductase from methicillin-resistant Staphylococcus aureus.

Authors:  Sudhir Dommaraju; Michael A Gorman; Con Dogovski; F Grant Pearce; Juliet A Gerrard; Renwick C J Dobson; Michael W Parker; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-12-25

4.  Crystallization and preliminary X-ray diffraction analysis of dihydrodipicolinate synthase 2 from Arabidopsis thaliana.

Authors:  Michael D W Griffin; Jagan M Billakanti; Juliet A Gerrard; Renwick C J Dobson; F Grant Pearce
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-27

5.  Crystallization and preliminary X-ray diffraction analysis of diaminopimelate epimerase from Escherichia coli.

Authors:  Lilian Hor; Renwick C J Dobson; Con Dogovski; Craig A Hutton; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-12-25

6.  Substrate-mediated stabilization of a tetrameric drug target reveals Achilles heel in anthrax.

Authors:  Jarrod E Voss; Stephen W Scally; Nicole L Taylor; Sarah C Atkinson; Michael D W Griffin; Craig A Hutton; Michael W Parker; Malcolm R Alderton; Juliet A Gerrard; Renwick C J Dobson; Con Dogovski; Matthew A Perugini
Journal:  J Biol Chem       Date:  2009-11-30       Impact factor: 5.157

7.  Cloning to crystallization of dihydrodipicolinate synthase from the intracellular pathogen Legionella pneumophila.

Authors:  Tanzeela Siddiqui; Jason J Paxman; Con Dogovski; Santosh Panjikar; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-30

8.  Cloning, expression, purification, crystallization and preliminary X-ray diffraction studies of N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus.

Authors:  Rachel A North; Sarah A Kessans; Sarah C Atkinson; Hironori Suzuki; Andrew J A Watson; Benjamin R Burgess; Lauren M Angley; André O Hudson; Arvind Varsani; Michael D W Griffin; Antony J Fairbanks; Renwick C J Dobson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-27
  8 in total

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