Literature DB >> 16204897

Towards rationalization of crystallization screening for small- to medium-sized academic laboratories: the PACT/JCSG+ strategy.

Janet Newman, David Egan, Thomas S Walter, Ran Meged, Ian Berry, Marouane Ben Jelloul, Joel L Sussman, David I Stuart, Anastassis Perrakis.   

Abstract

A crystallization screening process is presented that was developed for a small academic laboratory. Its underlying concept is to combine sparse-matrix screening with systematic screening in a minimum number of crystallization conditions. The sparse-matrix screen is the cherry-picked combination of conditions from the Joint Center for Structural Genomics (JCSG) extended using conditions from other screens. Its aim is to maximize the coverage of crystallization parameter space with no redundancy. The systematic screen, a pH-, anion- and cation-testing (PACT) screen, aims to decouple the components of each condition and to provide information about the protein, even in the absence of crystals, rather than cover a wide crystallization space. This screening strategy is combined with nanolitre-volume dispensing hardware and a small but practical experiment-tracking system. The screens have been tested both at the NKI and in other laboratories and it is concluded that they provide a useful minimal screening strategy.

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Year:  2005        PMID: 16204897     DOI: 10.1107/S0907444905024984

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  135 in total

1.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the grapevine Vitis vinifera.

Authors:  Sarah C Atkinson; Con Dogovski; Janet Newman; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

2.  Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of human dihydrouridine synthase.

Authors:  Sam Griffiths; Robert T Byrne; Alfred A Antson; Fiona Whelan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-02-22

3.  N-terminal truncation enables crystallization of the receptor-binding domain of the FedF bacterial adhesin.

Authors:  Maia De Kerpel; Inge Van Molle; Lea Brys; Lode Wyns; Henri De Greve; Julie Bouckaert
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-30

4.  Understanding inhibitor resistance in Mps1 kinase through novel biophysical assays and structures.

Authors:  Yoshitaka Hiruma; Andre Koch; Nazila Hazraty; Foteini Tsakou; René H Medema; Robbie P Joosten; Anastassis Perrakis
Journal:  J Biol Chem       Date:  2017-07-18       Impact factor: 5.157

5.  Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of N-acetylmannosamine-6-phosphate 2-epimerase from methicillin-resistant Staphylococcus aureus.

Authors:  Rachel A North; Sarah A Kessans; Michael D W Griffin; Andrew J A Watson; Antony J Fairbanks; Renwick C J Dobson
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-04-17       Impact factor: 1.056

6.  The purification, crystallization and preliminary X-ray diffraction analysis of two isoforms of meso-diaminopimelate decarboxylase from Arabidopsis thaliana.

Authors:  Michael R Oliver; Jennifer M Crowther; Mary M Leeman; Sarah A Kessans; Rachel A North; Katherine A Donovan; Michael D W Griffin; Hironori Suzuki; André O Hudson; Müge Kasanmascheff; Renwick C J Dobson
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-04-25       Impact factor: 1.056

7.  Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of N-acetylmannosamine kinase from methicillin-resistant Staphylococcus aureus.

Authors:  Rachel A North; Simona Seizova; Anja Stampfli; Sarah A Kessans; Hironori Suzuki; Michael D W Griffin; Marc Kvansakul; Renwick C J Dobson
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-04-17       Impact factor: 1.056

8.  Expression, purification and crystallization of a novel carbohydrate-binding module from the Ruminococcus flavefaciens cellulosome.

Authors:  Immacolata Venditto; Maria S J Centeno; Luis M A Ferreira; Carlos M G A Fontes; Shabir Najmudin
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-14       Impact factor: 1.056

9.  Expression, purification, crystallization and preliminary X-ray studies of the TAN1 orthologue from Methanothermobacter thermautotrophicus.

Authors:  Ana P G Silva; Robert T Byrne; Maria Chechik; Callum Smits; David G Waterman; Alfred A Antson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-31

10.  Crystallization and preliminary X-ray diffraction analysis of diaminopimelate epimerase from Escherichia coli.

Authors:  Lilian Hor; Renwick C J Dobson; Con Dogovski; Craig A Hutton; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-12-25
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