Literature DB >> 22949190

Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from Agrobacterium tumefaciens.

Sarah C Atkinson1, Con Dogovski, Renwick C J Dobson, Matthew A Perugini.   

Abstract

Dihydrodipicolinate synthase (DHDPS) catalyzes the first committed step of the lysine-biosynthesis pathway in bacteria, plants and some fungi. This study describes the cloning, expression, purification and crystallization of DHDPS (NP_354047.1) from the plant pathogen Agrobacterium tumefaciens (AgT-DHDPS). Enzyme-kinetics studies demonstrate that AgT-DHDPS possesses DHDPS activity in vitro. Crystals of AgT-DHDPS were grown in the unliganded form and in forms with substrate bound and with substrate plus allosteric inhibitor (lysine) bound. X-ray diffraction data sets were subsequently collected to a maximum resolution of 1.40 Å. Determination of the structure with and without substrate and inhibitor will offer insight into the design of novel pesticide agents.

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Year:  2012        PMID: 22949190      PMCID: PMC3433193          DOI: 10.1107/S1744309112033052

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  52 in total

1.  Cloning, expression, purification and crystallization of dihydrodipicolinate synthase from the grapevine Vitis vinifera.

Authors:  Sarah C Atkinson; Con Dogovski; Janet Newman; Renwick C J Dobson; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

Review 2.  Heard it through the grapevine: proteomic perspective on grape and wine.

Authors:  Marzia Giribaldi; Maria Gabriella Giuffrida
Journal:  J Proteomics       Date:  2010-05-23       Impact factor: 4.044

3.  Towards rationalization of crystallization screening for small- to medium-sized academic laboratories: the PACT/JCSG+ strategy.

Authors:  Janet Newman; David Egan; Thomas S Walter; Ran Meged; Ian Berry; Marouane Ben Jelloul; Joel L Sussman; David I Stuart; Anastassis Perrakis
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-09-28

4.  Federated repositories of X-ray diffraction images.

Authors:  Steve Androulakis; Jason Schmidberger; Mark A Bate; Ross DeGori; Anthony Beitz; Cyrus Keong; Bob Cameron; Sheena McGowan; Corrine J Porter; Andrew Harrison; Jane Hunter; Jennifer L Martin; Bostjan Kobe; Renwick C J Dobson; Michael W Parker; James C Whisstock; Joan Gray; Andrew Treloar; David Groenewegen; Neil Dickson; Ashley M Buckle
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-06-18

5.  The condensation step in diaminopimelate synthesis.

Authors:  Y Yugari; C Gilvarg
Journal:  J Biol Chem       Date:  1965-12       Impact factor: 5.157

6.  CROWN GALL OF GRAPE: Biology and Disease Management.

Authors:  Thomas J. Burr; Leon Otten
Journal:  Annu Rev Phytopathol       Date:  1999       Impact factor: 13.078

7.  Cloning and characterisation of dihydrodipicolinate synthase from the pathogen Neisseria meningitidis.

Authors:  Sean R A Devenish; Frances H A Huisman; Emily J Parker; Andrea T Hadfield; Juliet A Gerrard
Journal:  Biochim Biophys Acta       Date:  2009-02-21

8.  A new bioinformatics analysis tools framework at EMBL-EBI.

Authors:  Mickael Goujon; Hamish McWilliam; Weizhong Li; Franck Valentin; Silvano Squizzato; Juri Paern; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2010-05-03       Impact factor: 16.971

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  4 in total

Review 1.  Molecular evolution of an oligomeric biocatalyst functioning in lysine biosynthesis.

Authors:  Tatiana P Soares da Costa; Belinda M Abbott; Anthony R Gendall; Santosh Panjikar; Matthew A Perugini
Journal:  Biophys Rev       Date:  2017-12-05

2.  Crystal structure and in silico studies of dihydrodipicolinate synthase (DHDPS) from Aquifex aeolicus.

Authors:  Upasana Sridharan; Akio Ebihara; Seiki Kuramitsu; Shigeyuki Yokoyama; Thirumananseri Kumarevel; Karthe Ponnuraj
Journal:  Extremophiles       Date:  2014-07-05       Impact factor: 2.395

3.  Cloning to crystallization of dihydrodipicolinate synthase from the intracellular pathogen Legionella pneumophila.

Authors:  Tanzeela Siddiqui; Jason J Paxman; Con Dogovski; Santosh Panjikar; Matthew A Perugini
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-30

4.  Engineering a feedback inhibition-insensitive plant dihydrodipicolinate synthase to increase lysine content in Camelina sativa seeds.

Authors:  Alex Huang; Cathy Coutu; Myrtle Harrington; Kevin Rozwadowski; Dwayne D Hegedus
Journal:  Transgenic Res       Date:  2021-11-20       Impact factor: 2.788

  4 in total

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