Literature DB >> 22136620

Membrane protein structure and dynamics from NMR spectroscopy.

Mei Hong1, Yuan Zhang, Fanghao Hu.   

Abstract

We review the current state of membrane protein structure determination using solid-state nuclear magnetic resonance (NMR) spectroscopy. Multidimensional magic-angle-spinning correlation NMR combined with oriented-sample experiments has made it possible to measure a full panel of structural constraints of membrane proteins directly in lipid bilayers. These constraints include torsion angles, interatomic distances, oligomeric structure, protein dynamics, ligand structure and dynamics, and protein orientation and depth of insertion in the lipid bilayer. Using solid-state NMR, researchers have studied potassium channels, proton channels, Ca(2+) pumps, G protein-coupled receptors, bacterial outer membrane proteins, and viral fusion proteins to elucidate their mechanisms of action. Many of these membrane proteins have also been investigated in detergent micelles using solution NMR. Comparison of the solid-state and solution NMR structures provides important insights into the effects of the solubilizing environment on membrane protein structure and dynamics.

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Year:  2011        PMID: 22136620      PMCID: PMC4082981          DOI: 10.1146/annurev-physchem-032511-143731

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  134 in total

1.  Selective and extensive 13C labeling of a membrane protein for solid-state NMR investigations.

Authors:  M Hong; K Jakes
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

2.  Determination of multiple ***φ***-torsion angles in proteins by selective and extensive (13)C labeling and two-dimensional solid-state NMR.

Authors:  M Hong
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

Review 3.  Influence of solubilizing environments on membrane protein structures.

Authors:  Timothy A Cross; Mukesh Sharma; Myunggi Yi; Huan-Xiang Zhou
Journal:  Trends Biochem Sci       Date:  2010-08-18       Impact factor: 13.807

4.  A trimeric HIV-1 fusion peptide construct which does not self-associate in aqueous solution and which has 15-fold higher membrane fusion rate.

Authors:  Rong Yang; Mary Prorok; Francis J Castellino; David P Weliky
Journal:  J Am Chem Soc       Date:  2004-11-17       Impact factor: 15.419

Review 5.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

6.  Mapping the interaction surface of a membrane protein: unveiling the conformational switch of phospholamban in calcium pump regulation.

Authors:  J Zamoon; F Nitu; C Karim; D D Thomas; G Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-21       Impact factor: 11.205

Review 7.  The 3D structures of VDAC represent a native conformation.

Authors:  Sebastian Hiller; Jeff Abramson; Carmen Mannella; Gerhard Wagner; Kornelius Zeth
Journal:  Trends Biochem Sci       Date:  2010-08-12       Impact factor: 13.807

Review 8.  Solid-state NMR studies of amyloid fibril structure.

Authors:  Robert Tycko
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

9.  Effects of amantadine on the dynamics of membrane-bound influenza A M2 transmembrane peptide studied by NMR relaxation.

Authors:  Sarah D Cady; Mei Hong
Journal:  J Biomol NMR       Date:  2009-07-25       Impact factor: 2.835

10.  Proton transport behavior through the influenza A M2 channel: insights from molecular simulation.

Authors:  Hanning Chen; Yujie Wu; Gregory A Voth
Journal:  Biophys J       Date:  2007-08-10       Impact factor: 4.033

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  69 in total

1.  Atomistic insights into human Cys-loop receptors by solution NMR.

Authors:  David D Mowrey; Monica N Kinde; Yan Xu; Pei Tang
Journal:  Biochim Biophys Acta       Date:  2014-03-28

2.  Hybridization of TEDOR and NCX MAS solid-state NMR experiments for simultaneous acquisition of heteronuclear correlation spectra and distance measurements.

Authors:  T Gopinath; Songlin Wang; John Lee; Hideki Aihara; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-02-25       Impact factor: 2.835

3.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

4.  Chemical ligation of the influenza M2 protein for solid-state NMR characterization of the cytoplasmic domain.

Authors:  Byungsu Kwon; Daniel Tietze; Paul B White; Shu Y Liao; Mei Hong
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

5.  The dynamics of the G protein-coupled neuropeptide Y2 receptor in monounsaturated membranes investigated by solid-state NMR spectroscopy.

Authors:  Lars Thomas; Julian Kahr; Peter Schmidt; Ulrike Krug; Holger A Scheidt; Daniel Huster
Journal:  J Biomol NMR       Date:  2015-01-06       Impact factor: 2.835

6.  Membrane protein structure determination in membrana.

Authors:  Yi Ding; Yong Yao; Francesca M Marassi
Journal:  Acc Chem Res       Date:  2013-06-24       Impact factor: 22.384

Review 7.  Using X-ray Footprinting and Mass Spectrometry to Study the Structure and Function of Membrane Proteins.

Authors:  Sayan Gupta
Journal:  Protein Pept Lett       Date:  2019       Impact factor: 1.890

8.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

9.  The Unusual Transmembrane Partition of the Hexameric Channel of the Hepatitis C Virus.

Authors:  Wen Chen; Jyoti Dev; Julija Mezhyrova; Liqiang Pan; Alessandro Piai; James J Chou
Journal:  Structure       Date:  2018-03-15       Impact factor: 5.006

10.  Ca(2+) ATPase Conformational Transitions in Lipid Bilayers Mapped by Site-directed Ethylation and Solid-State NMR.

Authors:  Vitaly V Vostrikov; Martin Gustavsson; Tata Gopinath; Dan Mullen; Alysha A Dicke; Vincent Truong; Gianluigi Veglia
Journal:  ACS Chem Biol       Date:  2015-12-18       Impact factor: 5.100

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