Literature DB >> 20708406

The 3D structures of VDAC represent a native conformation.

Sebastian Hiller1, Jeff Abramson, Carmen Mannella, Gerhard Wagner, Kornelius Zeth.   

Abstract

The most abundant protein of the mitochondrial outer membrane is the voltage-dependent anion channel (VDAC), which facilitates the exchange of ions and molecules between mitochondria and cytosol and is regulated by interactions with other proteins and small molecules. VDAC has been studied extensively for more than three decades, and last year three independent investigations revealed a structure of VDAC-1 exhibiting 19 transmembrane beta-strands, constituting a unique structural class of beta-barrel membrane proteins. Here, we provide a historical perspective on VDAC research and give an overview of the experimental design used to obtain these structures. Furthermore, we validate the protein refolding approach and summarize the biochemical and biophysical evidence that links the 19-stranded structure to the native form of VDAC. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20708406      PMCID: PMC2933295          DOI: 10.1016/j.tibs.2010.03.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  61 in total

1.  The PSIPRED protein structure prediction server.

Authors:  L J McGuffin; K Bryson; D T Jones
Journal:  Bioinformatics       Date:  2000-04       Impact factor: 6.937

2.  On the role of VDAC in apoptosis: fact and fiction.

Authors:  Tatiana K Rostovtseva; Wenzhi Tan; Marco Colombini
Journal:  J Bioenerg Biomembr       Date:  2005-06       Impact factor: 2.945

Review 3.  The voltage-dependent anion channel (VDAC): function in intracellular signalling, cell life and cell death.

Authors:  V Shoshan-Barmatz; A Israelson; D Brdiczka; S S Sheu
Journal:  Curr Pharm Des       Date:  2006       Impact factor: 3.116

4.  Expression of porin from Rhodopseudomonas blastica in Escherichia coli inclusion bodies and folding into exact native structure.

Authors:  B Schmid; M Krömer; G E Schulz
Journal:  FEBS Lett       Date:  1996-02-26       Impact factor: 4.124

Review 5.  Molecular genetics of the VDAC ion channel: structural model and sequence analysis.

Authors:  M Forte; H R Guy; C A Mannella
Journal:  J Bioenerg Biomembr       Date:  1987-08       Impact factor: 2.945

6.  Bacterial expression and characterization of the mitochondrial outer membrane channel. Effects of n-terminal modifications.

Authors:  D A Koppel; K W Kinnally; P Masters; M Forte; E Blachly-Dyson; C A Mannella
Journal:  J Biol Chem       Date:  1998-05-29       Impact factor: 5.157

7.  Deletion variants of Neurospora mitochondrial porin: electrophysiological and spectroscopic analysis.

Authors:  Greg Runke; Elke Maier; William A T Summers; Denice C Bay; Roland Benz; Deborah A Court
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

8.  Reconstitution in planar lipid bilayers of a voltage-dependent anion-selective channel obtained from paramecium mitochondria.

Authors:  S J Schein; M Colombini; A Finkelstein
Journal:  J Membr Biol       Date:  1976-12-28       Impact factor: 1.843

9.  Autotransporter structure reveals intra-barrel cleavage followed by conformational changes.

Authors:  Travis J Barnard; Nathalie Dautin; Petra Lukacik; Harris D Bernstein; Susan K Buchanan
Journal:  Nat Struct Mol Biol       Date:  2007-11-11       Impact factor: 15.369

10.  The evolutionary history of mitochondrial porins.

Authors:  Matthew J Young; Denice C Bay; Georg Hausner; Deborah A Court
Journal:  BMC Evol Biol       Date:  2007-02-28       Impact factor: 3.260

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  52 in total

1.  Brownian dynamics simulations of ion transport through the VDAC.

Authors:  Kyu Il Lee; Huan Rui; Richard W Pastor; Wonpil Im
Journal:  Biophys J       Date:  2011-02-02       Impact factor: 4.033

Review 2.  Mitochondrial cholesterol: mechanisms of import and effects on mitochondrial function.

Authors:  Laura A Martin; Barry E Kennedy; Barbara Karten
Journal:  J Bioenerg Biomembr       Date:  2014-11-26       Impact factor: 2.945

Review 3.  Modeling and simulation of ion channels.

Authors:  Christopher Maffeo; Swati Bhattacharya; Jejoong Yoo; David Wells; Aleksei Aksimentiev
Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

4.  Evidence supporting the 19 β-strand model for Tom40 from cysteine scanning and protease site accessibility studies.

Authors:  Sebastian W K Lackey; Rebecca D Taylor; Nancy E Go; Annie Wong; E Laura Sherman; Frank E Nargang
Journal:  J Biol Chem       Date:  2014-06-19       Impact factor: 5.157

5.  Channeling your inner energy.

Authors:  José D Faraldo-Gómez
Journal:  Nat Struct Mol Biol       Date:  2014-07       Impact factor: 15.369

6.  Phosphatidylcholine affects the role of the sorting and assembly machinery in the biogenesis of mitochondrial β-barrel proteins.

Authors:  Max-Hinderk Schuler; Francesca Di Bartolomeo; Lena Böttinger; Susanne E Horvath; Lena-Sophie Wenz; Günther Daum; Thomas Becker
Journal:  J Biol Chem       Date:  2015-09-18       Impact factor: 5.157

Review 7.  VDAC Regulation: A Mitochondrial Target to Stop Cell Proliferation.

Authors:  Diana Fang; Eduardo N Maldonado
Journal:  Adv Cancer Res       Date:  2018-03-02       Impact factor: 6.242

8.  Physiological and proteomic alterations in rice (Oryza sativa L.) seedlings under hexavalent chromium stress.

Authors:  Fanrong Zeng; Xiaojian Wu; Boyin Qiu; Feibo Wu; Lixi Jiang; Guoping Zhang
Journal:  Planta       Date:  2014-05-13       Impact factor: 4.116

9.  β-Barrel mobility underlies closure of the voltage-dependent anion channel.

Authors:  Ulrich Zachariae; Robert Schneider; Rodolfo Briones; Zrinka Gattin; Jean-Philippe Demers; Karin Giller; Elke Maier; Markus Zweckstetter; Christian Griesinger; Stefan Becker; Roland Benz; Bert L de Groot; Adam Lange
Journal:  Structure       Date:  2012-07-26       Impact factor: 5.006

10.  Size-dependent forced PEG partitioning into channels: VDAC, OmpC, and α-hemolysin.

Authors:  M Alphan Aksoyoglu; Rudolf Podgornik; Sergey M Bezrukov; Philip A Gurnev; Murugappan Muthukumar; V Adrian Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-27       Impact factor: 11.205

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