Literature DB >> 22090931

N-(2,5-Dimethyl-phen-yl)succinamic acid monohydrate.

B S Saraswathi, Sabine Foro, B Thimme Gowda.   

Abstract

In the title compound, C(12)H(15)NO(3)·H(2)O, the conformation of the N-H bond in the amide segment is syn to the ortho-methyl group and anti to the meta-methyl group in the benzene ring. Further, the conformations of the amide O and the carbonyl O atom of the acid segment are anti to the adjacent methyl-ene H atoms. The C=O and O-H bonds of the acid group are syn to one another. The structure shows an inter-esting hydrogen-bonding pattern with the water mol-ecule forming hydrogen bonds with three different mol-ecules of the compound. In the crystal, mol-ecules are packed into infinite chains through inter-molecular O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22090931      PMCID: PMC3212274          DOI: 10.1107/S1600536811024937

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our studies of the effects of substituents on the structures and other aspects of N-(ar­yl)-amides, see: Gowda et al. (1999 ▶, 2000 ▶, 2010 ▶); Saraswathi et al. (2011 ▶). For modes of inter­linking carb­oxy­lic acids by hydrogen bonds, see: Leiserowitz (1976 ▶). For packing of mol­ecules involving dimeric hydrogen-bonding associations of each carboxyl group with a centrosymmetrically related neighbor, see: Jagannathan et al. (1994 ▶).

Experimental

Crystal data

C12H15NO3·H2O M = 239.27 Monoclinic, a = 22.012 (4) Å b = 6.051 (1) Å c = 9.558 (2) Å β = 95.90 (1)° V = 1266.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.24 × 0.08 × 0.04 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.978, T max = 0.996 4503 measured reflections 2293 independent reflections 964 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.099 wR(F 2) = 0.147 S = 1.08 2293 reflections 168 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024937/sj5169sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024937/sj5169Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024937/sj5169Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15NO3·H2OF(000) = 512
Mr = 239.27Dx = 1.255 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 663 reflections
a = 22.012 (4) Åθ = 2.8–27.7°
b = 6.051 (1) ŵ = 0.09 mm1
c = 9.558 (2) ÅT = 293 K
β = 95.90 (1)°Needle, colourless
V = 1266.3 (4) Å30.24 × 0.08 × 0.04 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector2293 independent reflections
Radiation source: fine-focus sealed tube964 reflections with I > 2σ(I)
graphiteRint = 0.075
Rotation method data acquisition using ω scansθmax = 25.3°, θmin = 2.8°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)h = −26→26
Tmin = 0.978, Tmax = 0.996k = −7→6
4503 measured reflectionsl = −11→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.099Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0275P)2 + 1.0954P] where P = (Fo2 + 2Fc2)/3
2293 reflections(Δ/σ)max = 0.004
168 parametersΔρmax = 0.20 e Å3
4 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1917 (2)0.0833 (9)0.5880 (4)0.0380 (13)
C20.1742 (2)−0.1196 (9)0.6356 (5)0.0437 (14)
C30.1180 (3)−0.2041 (9)0.5786 (5)0.0550 (15)
H30.1049−0.34020.60910.066*
C40.0817 (2)−0.0882 (10)0.4772 (6)0.0584 (17)
H40.0447−0.14870.44000.070*
C50.0990 (2)0.1137 (10)0.4304 (5)0.0464 (15)
C60.1550 (2)0.2008 (8)0.4869 (4)0.0404 (13)
H60.16780.33770.45680.048*
C70.2891 (2)0.2840 (9)0.5756 (4)0.0392 (13)
C80.3462 (2)0.3619 (9)0.6640 (4)0.0439 (14)
H8A0.33520.41450.75380.053*
H8B0.37380.23770.68200.053*
C90.3788 (2)0.5434 (8)0.5942 (5)0.0474 (14)
H9A0.34900.65250.55780.057*
H9B0.40690.61560.66460.057*
C100.4137 (2)0.4669 (10)0.4765 (5)0.0387 (13)
C110.2134 (2)−0.2482 (9)0.7455 (5)0.0652 (17)
H11A0.2135−0.17580.83490.078*
H11B0.2544−0.25600.71980.078*
H11C0.1973−0.39490.75180.078*
C120.0596 (2)0.2444 (10)0.3213 (5)0.0719 (19)
H12A0.02040.17430.30340.086*
H12B0.07890.25030.23580.086*
H12C0.05430.39180.35530.086*
N10.24841 (18)0.1758 (7)0.6459 (3)0.0431 (11)
H1N0.2554 (19)0.147 (7)0.733 (2)0.052*
O10.28284 (14)0.3146 (6)0.4485 (3)0.0590 (12)
O20.41537 (16)0.6192 (6)0.3788 (3)0.0571 (11)
H2O0.436 (2)0.562 (8)0.321 (4)0.068*
O30.43953 (15)0.2910 (6)0.4737 (3)0.0516 (10)
O40.48537 (18)−0.0138 (6)0.6831 (4)0.0569 (11)
H410.472 (2)0.090 (6)0.631 (4)0.068*
H420.505 (2)−0.111 (6)0.647 (5)0.068*
U11U22U33U12U13U23
C10.042 (4)0.043 (4)0.031 (3)−0.007 (3)0.008 (2)−0.001 (3)
C20.048 (4)0.045 (4)0.040 (3)0.002 (3)0.012 (3)−0.002 (3)
C30.060 (4)0.043 (4)0.066 (4)−0.009 (4)0.023 (3)−0.003 (3)
C40.045 (4)0.066 (5)0.064 (4)−0.014 (4)0.005 (3)−0.010 (4)
C50.036 (3)0.062 (5)0.041 (3)−0.005 (3)0.002 (3)−0.006 (3)
C60.042 (3)0.045 (4)0.034 (3)−0.003 (3)0.004 (2)0.001 (3)
C70.034 (3)0.052 (4)0.031 (3)0.003 (3)0.001 (2)0.000 (3)
C80.035 (3)0.067 (4)0.030 (2)0.001 (3)0.002 (2)−0.003 (3)
C90.044 (3)0.057 (4)0.041 (3)−0.005 (3)0.008 (2)−0.008 (3)
C100.030 (3)0.054 (4)0.030 (3)−0.005 (3)−0.004 (2)0.001 (3)
C110.068 (4)0.059 (4)0.071 (4)0.011 (4)0.017 (3)0.012 (3)
C120.042 (4)0.109 (5)0.062 (3)−0.010 (4)−0.006 (3)0.003 (4)
N10.045 (3)0.057 (3)0.028 (2)−0.011 (3)0.003 (2)0.009 (2)
O10.048 (2)0.104 (3)0.0241 (17)−0.010 (2)0.0010 (14)0.005 (2)
O20.066 (3)0.058 (3)0.051 (2)0.009 (2)0.0200 (18)0.010 (2)
O30.055 (2)0.056 (3)0.045 (2)0.012 (2)0.0104 (17)0.005 (2)
O40.069 (3)0.056 (3)0.048 (2)0.015 (2)0.019 (2)0.0068 (19)
C1—C21.378 (6)C8—H8B0.9700
C1—C61.389 (6)C9—C101.499 (6)
C1—N11.427 (6)C9—H9A0.9700
C2—C31.396 (7)C9—H9B0.9700
C2—C111.506 (6)C10—O31.208 (6)
C3—C41.382 (7)C10—O21.315 (6)
C3—H30.9300C11—H11A0.9600
C4—C51.368 (7)C11—H11B0.9600
C4—H40.9300C11—H11C0.9600
C5—C61.397 (6)C12—H12A0.9600
C5—C121.511 (6)C12—H12B0.9600
C6—H60.9300C12—H12C0.9600
C7—O11.223 (4)N1—H1N0.852 (18)
C7—N11.344 (5)O2—H2O0.830 (19)
C7—C81.516 (6)O4—H410.836 (19)
C8—C91.504 (6)O4—H420.827 (19)
C8—H8A0.9700
C2—C1—C6121.6 (5)C10—C9—C8114.3 (4)
C2—C1—N1119.0 (5)C10—C9—H9A108.7
C6—C1—N1119.5 (5)C8—C9—H9A108.7
C1—C2—C3117.6 (5)C10—C9—H9B108.7
C1—C2—C11122.1 (5)C8—C9—H9B108.7
C3—C2—C11120.3 (5)H9A—C9—H9B107.6
C4—C3—C2120.9 (5)O3—C10—O2123.6 (5)
C4—C3—H3119.6O3—C10—C9124.5 (5)
C2—C3—H3119.6O2—C10—C9111.8 (5)
C5—C4—C3121.5 (5)C2—C11—H11A109.5
C5—C4—H4119.3C2—C11—H11B109.5
C3—C4—H4119.3H11A—C11—H11B109.5
C4—C5—C6118.3 (5)C2—C11—H11C109.5
C4—C5—C12122.3 (5)H11A—C11—H11C109.5
C6—C5—C12119.4 (5)H11B—C11—H11C109.5
C1—C6—C5120.1 (5)C5—C12—H12A109.5
C1—C6—H6119.9C5—C12—H12B109.5
C5—C6—H6119.9H12A—C12—H12B109.5
O1—C7—N1123.9 (4)C5—C12—H12C109.5
O1—C7—C8120.6 (4)H12A—C12—H12C109.5
N1—C7—C8115.5 (4)H12B—C12—H12C109.5
C9—C8—C7112.7 (4)C7—N1—C1126.8 (4)
C9—C8—H8A109.1C7—N1—H1N122 (3)
C7—C8—H8A109.1C1—N1—H1N111 (3)
C9—C8—H8B109.1C10—O2—H2O104 (4)
C7—C8—H8B109.1H41—O4—H42117 (5)
H8A—C8—H8B107.8
C6—C1—C2—C30.1 (7)C4—C5—C6—C10.0 (7)
N1—C1—C2—C3179.0 (4)C12—C5—C6—C1179.6 (4)
C6—C1—C2—C11−179.8 (4)O1—C7—C8—C921.9 (7)
N1—C1—C2—C11−0.9 (7)N1—C7—C8—C9−160.2 (4)
C1—C2—C3—C40.4 (7)C7—C8—C9—C10−75.3 (5)
C11—C2—C3—C4−179.7 (4)C8—C9—C10—O3−34.4 (7)
C2—C3—C4—C5−0.7 (8)C8—C9—C10—O2148.7 (4)
C3—C4—C5—C60.5 (7)O1—C7—N1—C1−1.3 (8)
C3—C4—C5—C12−179.1 (5)C8—C7—N1—C1−179.1 (5)
C2—C1—C6—C5−0.3 (7)C2—C1—N1—C7139.5 (5)
N1—C1—C6—C5−179.2 (4)C6—C1—N1—C7−41.6 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.85 (2)2.10 (2)2.914 (4)161 (4)
O2—H2O···O4ii0.83 (2)1.81 (2)2.621 (5)164 (5)
O4—H41···O30.84 (2)2.01 (2)2.831 (5)168 (5)
O4—H42···O3iii0.83 (2)2.07 (2)2.882 (5)166 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.85 (2)2.10 (2)2.914 (4)161 (4)
O2—H2O⋯O4ii0.83 (2)1.81 (2)2.621 (5)164 (5)
O4—H41⋯O30.84 (2)2.01 (2)2.831 (5)168 (5)
O4—H42⋯O3iii0.83 (2)2.07 (2)2.882 (5)166 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(3-Methyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-16

3.  N-(2-Methyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

4.  N-(2,3-Dimethyl-phen-yl)succinamic acid.

Authors:  B S Saraswathi; Sabine Foro; B Thimme Gowda; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  N-(2,5-Dichloro-phen-yl)succinamic acid.

Authors:  B S Saraswathi; Sabine Foro; B Thimme Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23
  1 in total

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