Literature DB >> 21522736

N-(2,3-Dimethyl-phen-yl)succinamic acid.

B S Saraswathi, Sabine Foro, B Thimme Gowda, Hartmut Fuess.   

Abstract

In the title compound, C(12)H(15)NO(3), the conformations of N-H and C=O bonds in the amide segment are anti to each other and that of the amide H atom is syn to the ortho- and meta-methyl groups in the benzene ring. In the crystal, the mol-ecules are linked into infinite chains through inter-molecular O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21522736      PMCID: PMC3050406          DOI: 10.1107/S160053681005292X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to our study of the effect of ring and side-chain substitutions on the crystal structures of anilides, see: Gowda et al. (2010a ▶,b ▶,c ▶). For the modes of inter­linking carb­oxy­lic acids by hydrogen bonds, see: Leiserowitz (1976 ▶). The packing of mol­ecules involving dimeric hydrogen-bonded association of each carboxyl group with a centrosymmetrically related neighbor has also been observed, see: Jagannathan et al. (1994 ▶).

Experimental

Crystal data

C12H15NO3 M = 221.25 Triclinic, a = 4.8379 (4) Å b = 10.0424 (6) Å c = 11.9876 (8) Å α = 90.222 (6)° β = 99.614 (7)° γ = 98.506 (6)° V = 567.67 (7) Å3 Z = 2 Cu Kα radiation μ = 0.77 mm−1 T = 299 K 0.40 × 0.25 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 3962 measured reflections 2017 independent reflections 1751 reflections with I > 2σ(I) R int = 0.035 3 standard reflections every 120 min intensity decay: 0.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.183 S = 1.11 2017 reflections 154 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CAD-4-PC (Enraf–Nonius, 1996 ▶); cell refinement: CAD-4-PC; data reduction: REDU4 (Stoe & Cie, 1987 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681005292X/bq2264sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681005292X/bq2264Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15NO3Z = 2
Mr = 221.25F(000) = 236
Triclinic, P1Dx = 1.294 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54180 Å
a = 4.8379 (4) ÅCell parameters from 25 reflections
b = 10.0424 (6) Åθ = 5.9–22.4°
c = 11.9876 (8) ŵ = 0.77 mm1
α = 90.222 (6)°T = 299 K
β = 99.614 (7)°Prism, colorless
γ = 98.506 (6)°0.40 × 0.25 × 0.10 mm
V = 567.67 (7) Å3
Enraf–Nonius CAD-4 diffractometerRint = 0.035
Radiation source: fine-focus sealed tubeθmax = 66.9°, θmin = 3.7°
graphiteh = −5→5
ω/2θ scansk = −11→11
3962 measured reflectionsl = −14→14
2017 independent reflections3 standard reflections every 120 min
1751 reflections with I > 2σ(I) intensity decay: 0.5%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.064H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.183w = 1/[σ2(Fo2) + (0.1035P)2 + 0.1611P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max = 0.003
2017 reflectionsΔρmax = 0.42 e Å3
154 parametersΔρmin = −0.31 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.025 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.0305 (4)0.17546 (19)0.88221 (15)0.0389 (5)
C20.0537 (4)0.21089 (18)0.77926 (15)0.0396 (5)
C3−0.0852 (4)0.1370 (2)0.68124 (17)0.0481 (5)
C4−0.3018 (5)0.0324 (2)0.6889 (2)0.0597 (6)
H4−0.3937−0.01630.62360.072*
C5−0.3839 (5)−0.0011 (2)0.7909 (2)0.0655 (7)
H5−0.5314−0.07100.79420.079*
C6−0.2461 (4)0.0697 (2)0.88872 (19)0.0534 (6)
H6−0.29760.04640.95820.064*
C7−0.0169 (4)0.3000 (2)1.05958 (16)0.0502 (6)
C80.1749 (4)0.3738 (3)1.15994 (17)0.0560 (6)
H8A0.36760.35701.16080.067*
H8B0.17340.46991.15290.067*
C90.0814 (5)0.3293 (2)1.26929 (17)0.0545 (6)
H9A−0.11280.34421.26770.065*
H9B0.08720.23361.27720.065*
C100.2680 (4)0.4050 (2)1.36885 (16)0.0481 (5)
C110.2885 (4)0.3245 (2)0.77306 (18)0.0518 (5)
H11A0.45810.28880.76550.062*
H11B0.32180.37970.84090.062*
H11C0.23610.37780.70880.062*
C12−0.0018 (6)0.1712 (3)0.56799 (19)0.0684 (7)
H12A0.19520.16440.57090.082*
H12B−0.03290.26150.55000.082*
H12C−0.11440.10960.51090.082*
N10.1111 (3)0.24747 (17)0.98335 (13)0.0432 (5)
H1N0.295 (6)0.262 (2)0.998 (2)0.052*
O1−0.2754 (3)0.2922 (2)1.05008 (14)0.0823 (7)
O20.4948 (4)0.3603 (2)1.40631 (16)0.0769 (6)
H2O0.538 (7)0.397 (3)1.472 (3)0.092*
O30.2004 (4)0.50537 (19)1.40937 (15)0.0762 (6)
U11U22U33U12U13U23
C10.0239 (9)0.0495 (10)0.0406 (9)0.0034 (7)−0.0001 (7)−0.0042 (7)
C20.0310 (10)0.0455 (10)0.0418 (10)0.0092 (7)0.0022 (7)−0.0021 (7)
C30.0462 (12)0.0536 (11)0.0440 (11)0.0177 (9)−0.0027 (8)−0.0079 (8)
C40.0548 (14)0.0571 (12)0.0587 (13)0.0069 (10)−0.0133 (10)−0.0185 (10)
C50.0453 (13)0.0560 (12)0.0837 (16)−0.0122 (10)−0.0043 (11)−0.0092 (11)
C60.0394 (11)0.0598 (12)0.0556 (12)−0.0062 (9)0.0045 (9)0.0024 (9)
C70.0230 (9)0.0834 (14)0.0413 (10)0.0000 (8)0.0041 (7)−0.0105 (9)
C80.0285 (10)0.0906 (16)0.0439 (11)−0.0054 (9)0.0051 (8)−0.0160 (10)
C90.0400 (11)0.0723 (14)0.0469 (11)−0.0019 (9)0.0045 (8)−0.0115 (9)
C100.0388 (11)0.0676 (13)0.0375 (10)0.0039 (9)0.0089 (8)−0.0060 (9)
C110.0449 (12)0.0574 (12)0.0525 (11)0.0008 (9)0.0124 (9)0.0030 (9)
C120.0806 (18)0.0824 (16)0.0441 (12)0.0265 (13)0.0034 (11)−0.0066 (10)
N10.0196 (8)0.0677 (11)0.0391 (8)−0.0010 (7)0.0026 (6)−0.0072 (7)
O10.0220 (8)0.1555 (19)0.0645 (10)0.0054 (9)0.0015 (7)−0.0449 (11)
O20.0544 (11)0.1007 (14)0.0710 (11)0.0252 (9)−0.0140 (8)−0.0343 (10)
O30.0715 (12)0.0869 (12)0.0660 (11)0.0300 (10)−0.0155 (9)−0.0277 (9)
C1—C61.387 (3)C8—H8A0.9700
C1—C21.394 (3)C8—H8B0.9700
C1—N11.425 (2)C9—C101.499 (3)
C2—C31.402 (3)C9—H9A0.9700
C2—C111.498 (3)C9—H9B0.9700
C3—C41.385 (3)C10—O31.227 (3)
C3—C121.507 (3)C10—O21.261 (3)
C4—C51.376 (4)C11—H11A0.9600
C4—H40.9300C11—H11B0.9600
C5—C61.384 (3)C11—H11C0.9600
C5—H50.9300C12—H12A0.9600
C6—H60.9300C12—H12B0.9600
C7—O11.227 (2)C12—H12C0.9600
C7—N11.334 (3)N1—H1N0.87 (3)
C7—C81.508 (3)O2—H2O0.85 (3)
C8—C91.505 (3)
C6—C1—C2121.34 (18)H8A—C8—H8B108.0
C6—C1—N1119.13 (17)C10—C9—C8111.26 (17)
C2—C1—N1119.52 (16)C10—C9—H9A109.4
C1—C2—C3118.49 (18)C8—C9—H9A109.4
C1—C2—C11121.03 (16)C10—C9—H9B109.4
C3—C2—C11120.48 (17)C8—C9—H9B109.4
C4—C3—C2119.54 (19)H9A—C9—H9B108.0
C4—C3—C12119.9 (2)O3—C10—O2123.04 (19)
C2—C3—C12120.5 (2)O3—C10—C9120.7 (2)
C5—C4—C3121.38 (19)O2—C10—C9116.29 (19)
C5—C4—H4119.3C2—C11—H11A109.5
C3—C4—H4119.3C2—C11—H11B109.5
C4—C5—C6119.8 (2)H11A—C11—H11B109.5
C4—C5—H5120.1C2—C11—H11C109.5
C6—C5—H5120.1H11A—C11—H11C109.5
C5—C6—C1119.5 (2)H11B—C11—H11C109.5
C5—C6—H6120.3C3—C12—H12A109.5
C1—C6—H6120.3C3—C12—H12B109.5
O1—C7—N1123.30 (18)H12A—C12—H12B109.5
O1—C7—C8120.46 (18)C3—C12—H12C109.5
N1—C7—C8116.23 (16)H12A—C12—H12C109.5
C9—C8—C7111.27 (17)H12B—C12—H12C109.5
C9—C8—H8A109.4C7—N1—C1125.13 (16)
C7—C8—H8A109.4C7—N1—H1N115.0 (16)
C9—C8—H8B109.4C1—N1—H1N119.8 (16)
C7—C8—H8B109.4C10—O2—H2O101 (2)
C6—C1—C2—C30.1 (3)C2—C1—C6—C5−1.0 (3)
N1—C1—C2—C3178.85 (16)N1—C1—C6—C5−179.77 (19)
C6—C1—C2—C11−179.43 (19)O1—C7—C8—C949.2 (3)
N1—C1—C2—C11−0.7 (3)N1—C7—C8—C9−131.8 (2)
C1—C2—C3—C40.4 (3)C7—C8—C9—C10−178.67 (19)
C11—C2—C3—C4180.00 (19)C8—C9—C10—O395.5 (3)
C1—C2—C3—C12−179.90 (18)C8—C9—C10—O2−83.7 (3)
C11—C2—C3—C12−0.4 (3)O1—C7—N1—C1−0.3 (4)
C2—C3—C4—C5−0.1 (3)C8—C7—N1—C1−179.29 (19)
C12—C3—C4—C5−179.7 (2)C6—C1—N1—C7−51.1 (3)
C3—C4—C5—C6−0.8 (4)C2—C1—N1—C7130.1 (2)
C4—C5—C6—C11.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.87 (3)2.04 (3)2.909 (2)174 (2)
O2—H2O···O3ii0.85 (3)1.90 (4)2.679 (2)152 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.87 (3)2.04 (3)2.909 (2)174 (2)
O2—H2O⋯O3ii0.85 (3)1.90 (4)2.679 (2)152 (3)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(3-Methyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-16

3.  N-(2-Methyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-24

4.  N-(3,4-Dimethyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; B S Saraswathi; Hartmut Fuess
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-23

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  N-(2,5-Dimethyl-phen-yl)succinamic acid monohydrate.

Authors:  B S Saraswathi; Sabine Foro; B Thimme Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02
  1 in total

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