Literature DB >> 22091112

N-(2,5-Dichloro-phen-yl)succinamic acid.

B S Saraswathi, Sabine Foro, B Thimme Gowda.   

Abstract

In the title compound, C(10)H(9)Cl(2)NO(3), the conformation of the N-H bond in the amide segment is syn with respect to the ortho-Cl atom and anti to the meta-Cl atom of the benzene ring. In the crystal, inter-molecular O-H⋯O and N-H⋯O hydrogen bonds pack the mol-ecules into two types of chains along the a and b axes, respectively, leading to an overall sheet structure. The acid group in the side chain is disordered and was refined using a split model with site-occupation factors of 0.60:0.40.

Entities:  

Year:  2011        PMID: 22091112      PMCID: PMC3213535          DOI: 10.1107/S1600536811028297

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our studies of the effects of substituents on the structures and other aspects of N-(ar­yl)-amides, see: Bhat & Gowda (2000 ▶); Gowda et al. (2007 ▶); Saraswathi et al. (2011 ▶), on N-(ar­yl)-methane­sulfonamides, see: Jayalakshmi & Gowda (2004 ▶) and on N-chloro-aryl­sulfonamides, see: Gowda et al. (2003 ▶). For the modes of inter­linking carb­oxy­lic acids by hydrogen bonds, see: Leiserowitz (1976 ▶). For the packing of mol­ecules involving dimeric hydrogen-bonding associations of each carboxyl group with a centrosymmetrically related neighbor, see: Jagannathan et al. (1994 ▶).

Experimental

Crystal data

C10H9Cl2NO3 M = 262.08 Monoclinic, a = 5.726 (1) Å b = 4.787 (1) Å c = 41.583 (6) Å β = 91.93 (2)° V = 1139.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.56 mm−1 T = 293 K 0.44 × 0.16 × 0.09 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.791, T max = 0.951 3375 measured reflections 2046 independent reflections 1552 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.077 wR(F 2) = 0.171 S = 1.14 2046 reflections 185 parameters 54 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.75 e Å−3 Δρmin = −0.41 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811028297/vm2110sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028297/vm2110Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811028297/vm2110Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9Cl2NO3F(000) = 536
Mr = 262.08Dx = 1.528 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 987 reflections
a = 5.726 (1) Åθ = 2.9–27.7°
b = 4.787 (1) ŵ = 0.56 mm1
c = 41.583 (6) ÅT = 293 K
β = 91.93 (2)°Needle, colourless
V = 1139.2 (4) Å30.44 × 0.16 × 0.09 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer with a Sapphire CCD detector2046 independent reflections
Radiation source: fine-focus sealed tube1552 reflections with I > 2σ(I)
graphiteRint = 0.022
Rotation method data acquisition using ω scansθmax = 25.3°, θmin = 2.9°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)h = −5→6
Tmin = 0.791, Tmax = 0.951k = −5→2
3375 measured reflectionsl = −50→37
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.077Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.171H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0436P)2 + 4.544P] where P = (Fo2 + 2Fc2)/3
2046 reflections(Δ/σ)max = 0.048
185 parametersΔρmax = 0.75 e Å3
54 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.3416 (2)−0.1995 (3)0.13931 (4)0.0513 (4)
Cl20.8927 (3)0.6671 (3)0.22318 (3)0.0460 (4)
O10.8848 (9)0.5091 (8)0.10285 (10)0.0599 (13)
O2A1.4182 (19)−0.004 (3)0.0382 (2)0.088 (4)0.60
H2A1.4940−0.07470.02390.106*0.60
O2B1.325 (3)−0.072 (3)0.0293 (4)0.061 (4)0.40
H2B1.3972−0.11710.01340.074*0.40
O3A1.259 (2)0.248 (3)−0.0021 (3)0.082 (4)0.60
O3B1.357 (4)0.322 (4)0.0053 (5)0.096 (7)0.40
N10.7824 (8)0.0816 (9)0.12040 (10)0.0342 (10)
H1N0.791 (9)−0.091 (5)0.1164 (13)0.041*
C10.6994 (8)0.1621 (10)0.15067 (11)0.0296 (11)
C20.4967 (9)0.0438 (11)0.16233 (12)0.0342 (12)
C30.4144 (9)0.1202 (12)0.19205 (13)0.0402 (13)
H30.27800.04020.19940.048*
C40.5332 (9)0.3132 (12)0.21069 (13)0.0412 (13)
H40.47770.36620.23050.049*
C50.7367 (9)0.4276 (11)0.19951 (12)0.0334 (12)
C60.8201 (8)0.3543 (11)0.17001 (11)0.0321 (12)
H60.95760.43370.16300.039*
C70.8798 (10)0.2569 (11)0.09932 (13)0.0369 (13)
C80.9872 (12)0.1158 (13)0.07101 (14)0.0516 (16)
H8A1.1120−0.00470.07910.062*
H8B0.8695−0.00310.06080.062*
C9A1.082 (2)0.297 (3)0.0464 (2)0.044 (3)0.60
H9A1.16010.45410.05680.053*0.60
H9B0.95450.36880.03290.053*0.60
C9B1.172 (3)0.293 (5)0.0582 (5)0.058 (5)0.40
H9C1.28590.32770.07560.069*0.40
H9D1.10280.47090.05230.069*0.40
C10A1.253 (3)0.145 (3)0.0256 (4)0.057 (4)0.60
C10B1.302 (4)0.187 (4)0.0298 (5)0.043 (6)0.40
U11U22U33U12U13U23
Cl10.0426 (8)0.0500 (9)0.0613 (9)−0.0162 (7)0.0020 (7)−0.0020 (8)
Cl20.0553 (9)0.0455 (8)0.0376 (7)−0.0051 (7)0.0053 (6)−0.0069 (7)
O10.106 (4)0.026 (2)0.050 (3)−0.007 (2)0.040 (2)−0.0065 (19)
O2A0.092 (7)0.118 (8)0.055 (5)0.027 (6)0.018 (5)−0.009 (5)
O2B0.068 (6)0.056 (5)0.062 (6)0.002 (4)0.031 (4)−0.004 (4)
O3A0.075 (6)0.109 (8)0.065 (6)0.019 (6)0.017 (5)−0.005 (6)
O3B0.110 (10)0.081 (9)0.099 (10)0.001 (8)0.038 (8)0.009 (8)
N10.044 (2)0.024 (2)0.037 (2)−0.004 (2)0.0166 (19)−0.004 (2)
C10.029 (2)0.025 (3)0.035 (3)0.003 (2)0.011 (2)0.001 (2)
C20.031 (3)0.030 (3)0.042 (3)−0.003 (2)0.005 (2)0.001 (2)
C30.032 (3)0.045 (3)0.044 (3)−0.003 (3)0.016 (2)0.008 (3)
C40.042 (3)0.046 (3)0.037 (3)0.004 (3)0.020 (2)0.005 (3)
C50.037 (3)0.031 (3)0.032 (3)0.004 (2)0.007 (2)0.002 (2)
C60.028 (3)0.033 (3)0.037 (3)−0.001 (2)0.013 (2)0.005 (2)
C70.050 (3)0.026 (3)0.035 (3)−0.002 (2)0.012 (2)−0.006 (2)
C80.069 (4)0.043 (3)0.045 (3)−0.007 (3)0.027 (3)−0.012 (3)
C9A0.062 (6)0.039 (5)0.032 (5)0.007 (5)0.013 (4)0.002 (5)
C9B0.064 (9)0.050 (8)0.061 (9)−0.001 (8)0.018 (7)−0.011 (8)
C10A0.061 (7)0.041 (7)0.073 (8)−0.009 (5)0.043 (6)0.002 (6)
C10B0.048 (8)0.037 (8)0.045 (7)−0.001 (5)0.009 (4)−0.004 (5)
Cl1—C21.733 (5)C3—H30.9300
Cl2—C51.739 (5)C4—C51.382 (7)
O1—C71.217 (6)C4—H40.9300
O2A—C10A1.282 (15)C5—C61.377 (7)
O2A—H2A0.8200C6—H60.9300
O2B—C10B1.246 (17)C7—C81.507 (7)
O2B—H2B0.8200C8—C9A1.458 (12)
O3A—C10A1.254 (12)C8—C9B1.47 (2)
O3B—C10B1.256 (15)C8—H8A0.9700
N1—C71.348 (7)C8—H8B0.9700
N1—C11.414 (6)C9A—C10A1.516 (12)
N1—H1N0.85 (2)C9A—H9A0.9700
C1—C61.391 (7)C9A—H9B0.9700
C1—C21.393 (7)C9B—C10B1.505 (16)
C2—C31.386 (7)C9B—H9C0.9700
C3—C41.372 (8)C9B—H9D0.9700
C10A—O2A—H2A109.5C9A—C8—C7117.0 (6)
C10B—O2B—H2B109.5C9B—C8—C7110.1 (8)
C7—N1—C1124.6 (4)C9A—C8—H8A108.1
C7—N1—H1N117 (4)C9B—C8—H8A86.4
C1—N1—H1N118 (4)C7—C8—H8A108.1
C6—C1—C2118.1 (4)C9A—C8—H8B108.1
C6—C1—N1121.3 (4)C9B—C8—H8B132.7
C2—C1—N1120.5 (4)C7—C8—H8B108.1
C3—C2—C1121.0 (5)H8A—C8—H8B107.3
C3—C2—Cl1119.1 (4)C8—C9A—C10A112.3 (10)
C1—C2—Cl1119.9 (4)C8—C9A—H9A109.1
C4—C3—C2120.3 (5)C10A—C9A—H9A109.1
C4—C3—H3119.8C8—C9A—H9B109.1
C2—C3—H3119.8C10A—C9A—H9B109.1
C3—C4—C5119.0 (5)H9A—C9A—H9B107.9
C3—C4—H4120.5C8—C9B—C10B118.2 (17)
C5—C4—H4120.5C8—C9B—H9C107.8
C6—C5—C4121.4 (5)C10B—C9B—H9C107.7
C6—C5—Cl2119.1 (4)C8—C9B—H9D107.8
C4—C5—Cl2119.6 (4)C10B—C9B—H9D107.8
C5—C6—C1120.2 (4)H9C—C9B—H9D107.1
C5—C6—H6119.9O3A—C10A—O2A123.5 (12)
C1—C6—H6119.9O3A—C10A—C9A112.0 (11)
O1—C7—N1123.3 (5)O2A—C10A—C9A121.0 (14)
O1—C7—C8122.0 (5)O2B—C10B—O3B117.8 (19)
N1—C7—C8114.7 (5)O2B—C10B—C9B113.7 (18)
C9A—C8—C9B27.7 (8)O3B—C10B—C9B127.6 (18)
C7—N1—C1—C6−39.9 (8)C1—N1—C7—O1−7.7 (9)
C7—N1—C1—C2142.0 (5)C1—N1—C7—C8171.2 (5)
C6—C1—C2—C31.5 (8)O1—C7—C8—C9A−4.8 (11)
N1—C1—C2—C3179.7 (5)N1—C7—C8—C9A176.2 (7)
C6—C1—C2—Cl1−179.4 (4)O1—C7—C8—C9B24.5 (13)
N1—C1—C2—Cl1−1.2 (7)N1—C7—C8—C9B−154.4 (10)
C1—C2—C3—C4−0.6 (8)C9B—C8—C9A—C10A79 (2)
Cl1—C2—C3—C4−179.7 (4)C7—C8—C9A—C10A160.8 (11)
C2—C3—C4—C5−0.6 (8)C9A—C8—C9B—C10B−70 (2)
C3—C4—C5—C60.8 (8)C7—C8—C9B—C10B179.8 (15)
C3—C4—C5—Cl2−178.7 (4)C8—C9A—C10A—O3A152.1 (15)
C4—C5—C6—C10.1 (8)C8—C9A—C10A—O2A−48 (2)
Cl2—C5—C6—C1179.7 (4)C8—C9B—C10B—O2B−33 (3)
C2—C1—C6—C5−1.3 (7)C8—C9B—C10B—O3B136 (3)
N1—C1—C6—C5−179.4 (5)
D—H···AD—HH···AD···AD—H···A
O2A—H2A···O3Ai0.821.902.687 (15)162.
O2B—H2B···O3Bi0.821.902.64 (2)150.
N1—H1N···O1ii0.85 (2)2.07 (2)2.901 (6)167 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2A—H2A⋯O3Ai0.821.902.687 (15)162
O2B—H2B⋯O3Bi0.821.902.64 (2)150
N1—H1N⋯O1ii0.85 (2)2.07 (2)2.901 (6)167 (5)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(2,6-Dichloro-phen-yl)succinamic acid.

Authors:  B S Saraswathi; Sabine Foro; B Thimme Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02

3.  N-(2,5-Dimethyl-phen-yl)succinamic acid monohydrate.

Authors:  B S Saraswathi; Sabine Foro; B Thimme Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  N-(2-Chloro-5-methyl-phen-yl)succinamic acid.

Authors:  B Thimme Gowda; Sabine Foro; U Chaithanya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-23
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.