Literature DB >> 22083880

Al NMR: a novel NMR data processing program optimized for sparse sampling.

John M Gledhill1, A Joshua Wand.   

Abstract

Sparse sampling in biomolecular multidimensional NMR offers increased acquisition speed and resolution and, if appropriate conditions are met, an increase in sensitivity. Sparse sampling of indirectly detected time domains combined with the direct truly multidimensional Fourier transform has elicited particular attention because of the ability to generate a final spectrum amenable to traditional analysis techniques. A number of sparse sampling schemes have been described including radial sampling, random sampling, concentric sampling and variations thereof. A fundamental feature of these sampling schemes is that the resulting time domain data array is not amenable to traditional Fourier transform based processing and phasing correction techniques. In addition, radial sampling approaches offer a number of advantages and capabilities that are also not accessible using standard NMR processing techniques. These include sensitivity enhancement, sub-matrix processing and determination of minimal sets of sampling angles. Here we describe a new software package (Al NMR) that enables these capabilities in the context of a general NMR data processing environment.

Entities:  

Mesh:

Year:  2011        PMID: 22083880      PMCID: PMC3266973          DOI: 10.1007/s10858-011-9584-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  29 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  New methods for fast multidimensional NMR.

Authors:  Ray Freeman; Eriks Kupce
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

3.  Non-uniform frequency domain for optimal exploitation of non-uniform sampling.

Authors:  Krzysztof Kazimierczuk; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński
Journal:  J Magn Reson       Date:  2010-05-25       Impact factor: 2.229

Review 4.  Random sampling in multidimensional NMR spectroscopy.

Authors:  Krzysztof Kazimierczuk; Jan Stanek; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-08-03       Impact factor: 9.795

5.  (4,2)D Projection--reconstruction experiments for protein backbone assignment: application to human carbonic anhydrase II and calbindin D(28K).

Authors:  Ronald A Venters; Brian E Coggins; Doug Kojetin; John Cavanagh; Pei Zhou
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

6.  Automated projection spectroscopy (APSY).

Authors:  Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

7.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Application of linear prediction and singular value decomposition (LPSVD) to determine NMR frequencies and intensities from the FID.

Authors:  H Barkhuijsen; R de Beer; W M Bovee; J H Creyghton; D van Ormondt
Journal:  Magn Reson Med       Date:  1985-02       Impact factor: 4.668

10.  Optimized angle selection for radial sampled NMR experiments.

Authors:  John M Gledhill; A Joshua Wand
Journal:  J Magn Reson       Date:  2008-09-11       Impact factor: 2.229

View more
  6 in total

1.  Role of cavities and hydration in the pressure unfolding of T4 lysozyme.

Authors:  Nathaniel V Nucci; Brian Fuglestad; Evangelia A Athanasoula; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

2.  Solution NMR investigation of the response of the lactose repressor core domain dimer to hydrostatic pressure.

Authors:  Brian Fuglestad; Matthew A Stetz; Zachary Belnavis; A Joshua Wand
Journal:  Biophys Chem       Date:  2017-02-24       Impact factor: 2.352

3.  PACSY, a relational database management system for protein structure and chemical shift analysis.

Authors:  Woonghee Lee; Wookyung Yu; Suhkmann Kim; Iksoo Chang; Weontae Lee; John L Markley
Journal:  J Biomol NMR       Date:  2012-08-19       Impact factor: 2.835

4.  Measurement and control of pH in the aqueous interior of reverse micelles.

Authors:  Bryan S Marques; Nathaniel V Nucci; Igor Dodevski; Kristina W C Wang; Evangelia A Athanasoula; Christine Jorge; A Joshua Wand
Journal:  J Phys Chem B       Date:  2014-02-19       Impact factor: 2.991

5.  Reverse micelles as a platform for dynamic nuclear polarization in solution NMR of proteins.

Authors:  Kathleen G Valentine; Guinevere Mathies; Sabrina Bédard; Nathaniel V Nucci; Igor Dodevski; Matthew A Stetz; Thach V Can; Robert G Griffin; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2014-02-05       Impact factor: 15.419

6.  Optimized reverse micelle surfactant system for high-resolution NMR spectroscopy of encapsulated proteins and nucleic acids dissolved in low viscosity fluids.

Authors:  Igor Dodevski; Nathaniel V Nucci; Kathleen G Valentine; Gurnimrat K Sidhu; Evan S O'Brien; Arthur Pardi; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2014-02-19       Impact factor: 15.419

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.