Literature DB >> 15954785

(4,2)D Projection--reconstruction experiments for protein backbone assignment: application to human carbonic anhydrase II and calbindin D(28K).

Ronald A Venters1, Brian E Coggins, Doug Kojetin, John Cavanagh, Pei Zhou.   

Abstract

Projection-reconstruction NMR experiments have been shown to significantly reduce the acquisition time required to obtain protein backbone assignment data. To date, this concept has only been applied to smaller (15)N/(13)C-labeled proteins. Here, we show that projection-reconstruction NMR techniques can be extended to larger protonated and perdeuterated proteins. We present a suite of (4,2)D triple-resonance experiments for protein backbone assignment and a Hybrid Backprojection/Lower-Value algorithm for reconstructing data with relatively weak signal-to-noise ratios. In addition, we propose a sampling theorem and discuss its implication on the choice of projection angles. We demonstrate the efficacy of this approach using the 29 kDa protein, human carbonic anhydrase II and the 30 kDa protein, calbindin D(28K).

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Year:  2005        PMID: 15954785     DOI: 10.1021/ja0509580

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  Sparsely sampled high-resolution 4-D experiments for efficient backbone resonance assignment of disordered proteins.

Authors:  Jie Wen; Jihui Wu; Pei Zhou
Journal:  J Magn Reson       Date:  2011-01-04       Impact factor: 2.229

3.  PR-CALC: a program for the reconstruction of NMR spectra from projections.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2006-03       Impact factor: 2.835

4.  Processing of ND NMR spectra sampled in polar coordinates: a simple Fourier transform instead of a reconstruction.

Authors:  Dominique Marion
Journal:  J Biomol NMR       Date:  2006-09-09       Impact factor: 2.835

5.  Phasing arbitrarily sampled multidimensional NMR data.

Authors:  John M Gledhill; A Joshua Wand
Journal:  J Magn Reson       Date:  2007-06-06       Impact factor: 2.229

6.  Analytical solution to the coupled evolution of multidimensional NMR data.

Authors:  Geoffrey A Mueller
Journal:  J Biomol NMR       Date:  2009-03-24       Impact factor: 2.835

7.  On projection-reconstruction NMR.

Authors:  Clark D Ridge; Vladimir A Mandelshtam
Journal:  J Biomol NMR       Date:  2009-01-22       Impact factor: 2.835

8.  SEnD NMR: sensitivity enhanced n-dimensional NMR.

Authors:  John M Gledhill; A Joshua Wand
Journal:  J Magn Reson       Date:  2009-11-18       Impact factor: 2.229

9.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

10.  FM reconstruction of non-uniformly sampled protein NMR data at higher dimensions and optimization by distillation.

Authors:  Sven G Hyberts; Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2009-08-25       Impact factor: 2.835

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