Literature DB >> 22083101

Uncovering the role of 5-hydroxymethylcytosine in the epigenome.

Miguel R Branco1, Gabriella Ficz, Wolf Reik.   

Abstract

Just over 2 years ago, TET1 was found to catalyse the oxidation of 5-methylcytosine, a well-known epigenetic mark, into 5-hydroxymethylcytosine in mammalian DNA. The exciting prospect of a novel epigenetic modification that may dynamically regulate DNA methylation has led to the rapid accumulation of publications from a wide array of fields, from biochemistry to stem cell biology. Although we have only started to scratch the surface, interesting clues on the role of 5-hydroxymethylcytosine are quickly emerging.

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Year:  2011        PMID： 22083101     DOI： 10.1038/nrg3080

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN： 1471-0056            Impact factor:   53.242


  56 in total

1.  TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine.

Authors:  Haikuo Zhang; Xin Zhang; Erin Clark; Michelle Mulcahey; Stephen Huang; Yujiang Geno Shi
Journal:  Cell Res       Date:  2010-11-16       Impact factor: 25.617

2.  Dynamic link of DNA demethylation, DNA strand breaks and repair in mouse zygotes.

Authors:  Mark Wossidlo; Julia Arand; Vittorio Sebastiano; Konstantin Lepikhov; Michele Boiani; Richard Reinhardt; Hans Schöler; Jörn Walter
Journal:  EMBO J       Date:  2010-05-04       Impact factor: 11.598

3.  Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos.

Authors:  Azusa Inoue; Yi Zhang
Journal:  Science       Date:  2011-09-22       Impact factor: 47.728

4.  Active demethylation of the paternal genome in the mouse zygote.

Authors:  J Oswald; S Engemann; N Lane; W Mayer; A Olek; R Fundele; W Dean; W Reik; J Walter
Journal:  Curr Biol       Date:  2000-04-20       Impact factor: 10.834

5.  Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites.

Authors:  Atanu Maiti; Alexander C Drohat
Journal:  J Biol Chem       Date:  2011-08-23       Impact factor: 5.157

6.  Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.

Authors:  Hao Wu; Ana C D'Alessio; Shinsuke Ito; Kai Xia; Zhibin Wang; Kairong Cui; Keji Zhao; Yi Eve Sun; Yi Zhang
Journal:  Nature       Date:  2011-03-30       Impact factor: 49.962

7.  Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.

Authors:  Chun-Xiao Song; Keith E Szulwach; Ye Fu; Qing Dai; Chengqi Yi; Xuekun Li; Yujing Li; Chih-Hsin Chen; Wen Zhang; Xing Jian; Jing Wang; Li Zhang; Timothy J Looney; Baichen Zhang; Lucy A Godley; Leslie M Hicks; Bruce T Lahn; Peng Jin; Chuan He
Journal:  Nat Biotechnol       Date:  2010-12-12       Impact factor: 54.908

8.  The presence of 5-hydroxymethylcytosine in animal deoxyribonucleic acid.

Authors:  N W Penn; R Suwalski; C O'Riley; K Bojanowski; R Yura
Journal:  Biochem J       Date:  1972-02       Impact factor: 3.857

9.  Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

Authors:  Gabriella Ficz; Miguel R Branco; Stefanie Seisenberger; Fátima Santos; Felix Krueger; Timothy A Hore; C Joana Marques; Simon Andrews; Wolf Reik
Journal:  Nature       Date:  2011-04-03       Impact factor: 49.962

10.  Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2.

Authors:  Myunggon Ko; Yun Huang; Anna M Jankowska; Utz J Pape; Mamta Tahiliani; Hozefa S Bandukwala; Jungeun An; Edward D Lamperti; Kian Peng Koh; Rebecca Ganetzky; X Shirley Liu; L Aravind; Suneet Agarwal; Jaroslaw P Maciejewski; Anjana Rao
Journal:  Nature       Date:  2010-12-09       Impact factor: 49.962
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  313 in total

1.  Masculine epigenetic sex marks of the CYP19A1/aromatase promoter in genetically male chicken embryonic gonads are resistant to estrogen-induced phenotypic sex conversion.

Authors:  Haley L Ellis; Keiko Shioda; Noël F Rosenthal; Kathryn R Coser; Toshi Shioda
Journal:  Biol Reprod       Date:  2012-07-26       Impact factor: 4.285

Review 2.  Functions of DNA methylation: islands, start sites, gene bodies and beyond.

Authors:  Peter A Jones
Journal:  Nat Rev Genet       Date:  2012-05-29       Impact factor: 53.242

Review 3.  Epigenetic inheritance of disease and disease risk.

Authors:  Johannes Bohacek; Isabelle M Mansuy
Journal:  Neuropsychopharmacology       Date:  2012-07-11       Impact factor: 7.853

Review 4.  Epigenetic susceptibility factors for prostate cancer with aging.

Authors:  N A Damaschke; B Yang; S Bhusari; J P Svaren; D F Jarrard
Journal:  Prostate       Date:  2013-09-02       Impact factor: 4.104

5.  The oncogenic microRNA miR-22 targets the TET2 tumor suppressor to promote hematopoietic stem cell self-renewal and transformation.

Authors:  Su Jung Song; Keisuke Ito; Ugo Ala; Lev Kats; Kaitlyn Webster; Su Ming Sun; Mojca Jongen-Lavrencic; Katia Manova-Todorova; Julie Teruya-Feldstein; David E Avigan; Ruud Delwel; Pier Paolo Pandolfi
Journal:  Cell Stem Cell       Date:  2013-07-03       Impact factor: 24.633

Review 6.  Post-transcriptional regulation of LINE-1 retrotransposition by AID/APOBEC and ADAR deaminases.

Authors:  Elisa Orecchini; Loredana Frassinelli; Silvia Galardi; Silvia Anna Ciafrè; Alessandro Michienzi
Journal:  Chromosome Res       Date:  2018-02-02       Impact factor: 5.239

7.  Lithium reduces the effects of rotenone-induced complex I dysfunction on DNA methylation and hydroxymethylation in rat cortical primary neurons.

Authors:  Gustavo Scola; Helena K Kim; L Trevor Young; Mirian Salvador; Ana C Andreazza
Journal:  Psychopharmacology (Berl)       Date:  2014-04-29       Impact factor: 4.530

Review 8.  Alcohol effects on the epigenome in the germline: Role in the inheritance of alcohol-related pathology.

Authors:  Lucy G Chastain; Dipak K Sarkar
Journal:  Alcohol       Date:  2017-03-06       Impact factor: 2.405

9.  DNA methylation and childhood asthma in the inner city.

Authors:  Ivana V Yang; Brent S Pedersen; Andrew Liu; George T O'Connor; Stephen J Teach; Meyer Kattan; Rana Tawil Misiak; Rebecca Gruchalla; Suzanne F Steinbach; Stanley J Szefler; Michelle A Gill; Agustin Calatroni; Gloria David; Corinne E Hennessy; Elizabeth J Davidson; Weiming Zhang; Peter Gergen; Alkis Togias; William W Busse; David A Schwartz
Journal:  J Allergy Clin Immunol       Date:  2015-03-11       Impact factor: 10.793

10.  Modulation of ten-eleven translocation 1 (TET1), Isocitrate Dehydrogenase (IDH) expression, α-Ketoglutarate (α-KG), and DNA hydroxymethylation levels by interleukin-1β in primary human chondrocytes.

Authors:  Abdul Haseeb; Mohammad Shahidul Makki; Tariq M Haqqi
Journal:  J Biol Chem       Date:  2014-01-27       Impact factor: 5.157
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