Literature DB >> 21588418

3,3,6,6-Tetra-methyl-9-(2-nitro-phen-yl)-3,4,6,7-tetra-hydro-2H-xanthene-1,8(5H,9H)-dione.

Yingming Mo1, Hong-Jun Zang, Bo-Wen Cheng.   

Abstract

In the title compound, C(23)H(25)NO(5), the pyran ring adopts a flattened boat conformation, while the two cyclo-hexenone rings are in envelope conformations. The 3-nitro-phenyl ring is almost perpendicular to the pyran ring, making a dihedral angle of 87.1 (3)°.

Entities:  

Year:  2010        PMID: 21588418      PMCID: PMC3007304          DOI: 10.1107/S1600536810029211

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of xanthenes as dyes and fluorescent materials for visualization of biomolecules and in laser technologies, see: Menchen et al. (2003 ▶); Banerjee & Mukherjee (1981 ▶). They can be converted by oxidation into xanthylium salts, which are also effective as dyes and fluorescent materials, see: Nogradi (2003 ▶); Kamel & Shoeb (1964 ▶). For the biological and pharmaceutical properties of xanthenes, see: Hideo (1981 ▶); Lambert et al. (1997 ▶); Poupelin et al. (1978 ▶).

Experimental

Crystal data

C23H25NO5 M = 395.44 Orthorhombic, a = 12.199 (2) Å b = 10.510 (2) Å c = 32.484 (7) Å V = 4164.9 (14) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 113 K 0.20 × 0.16 × 0.10 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2002 ▶) T min = 0.983, T max = 0.991 21559 measured reflections 3670 independent reflections 3242 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.144 S = 1.16 3670 reflections 267 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXS97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, publication_text. DOI: 10.1107/S1600536810029211/jh2186sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029211/jh2186Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H25NO5Dx = 1.261 Mg m3
Mr = 395.44Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 9106 reflections
a = 12.199 (2) Åθ = 1.9–28.1°
b = 10.510 (2) ŵ = 0.09 mm1
c = 32.484 (7) ÅT = 113 K
V = 4164.9 (14) Å3Prism, white
Z = 80.20 × 0.16 × 0.10 mm
F(000) = 1680
Rigaku Saturn CCD area-detector diffractometer3670 independent reflections
Radiation source: rotating anode3242 reflections with I > 2σ(I)
confocalRint = 0.053
Detector resolution: 7.31 pixels mm-1θmax = 25.0°, θmin = 2.5°
ω and φ scansh = −14→14
Absorption correction: multi-scan (CrystalClear; Rigaku, 2002)k = −10→12
Tmin = 0.983, Tmax = 0.991l = −38→36
21559 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.063H-atom parameters constrained
wR(F2) = 0.144w = 1/[σ2(Fo2) + (0.0574P)2 + 1.5964P] where P = (Fo2 + 2Fc2)/3
S = 1.16(Δ/σ)max = 0.001
3670 reflectionsΔρmax = 0.22 e Å3
267 parametersΔρmin = −0.24 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0098 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.54601 (12)0.17933 (14)0.36579 (4)0.0237 (4)
O20.25719 (14)0.45727 (16)0.40103 (5)0.0387 (5)
O30.49229 (13)0.50696 (15)0.26800 (4)0.0306 (4)
O40.77268 (15)0.56112 (18)0.42780 (6)0.0474 (5)
O50.78206 (14)0.76618 (17)0.42061 (5)0.0400 (5)
N10.73522 (16)0.66330 (19)0.41615 (5)0.0299 (5)
C10.56412 (18)0.2415 (2)0.32907 (6)0.0219 (5)
C20.64378 (18)0.1708 (2)0.30297 (6)0.0227 (5)
H2A0.60540.09960.28920.027*
H2B0.70150.13400.32080.027*
C30.69762 (18)0.2553 (2)0.27026 (6)0.0226 (5)
C40.60627 (18)0.3304 (2)0.24887 (6)0.0246 (5)
H4A0.63980.38970.22880.029*
H4B0.55960.27020.23330.029*
C50.53483 (18)0.4053 (2)0.27790 (6)0.0244 (5)
C60.51360 (17)0.3502 (2)0.31886 (6)0.0214 (5)
C70.43583 (17)0.4193 (2)0.34753 (6)0.0230 (5)
H70.36680.43800.33210.028*
C80.40825 (17)0.3317 (2)0.38289 (6)0.0238 (5)
C90.31381 (19)0.3637 (2)0.40908 (7)0.0296 (5)
C100.2868 (2)0.2742 (2)0.44399 (7)0.0343 (6)
H10A0.23610.20780.43370.041*
H10B0.24810.32240.46580.041*
C110.3870 (2)0.2095 (2)0.46289 (6)0.0298 (6)
C120.44987 (19)0.1422 (2)0.42801 (6)0.0261 (5)
H12A0.52270.11560.43830.031*
H12B0.40940.06470.41980.031*
C130.46462 (17)0.2256 (2)0.39124 (6)0.0227 (5)
C140.75809 (19)0.1729 (2)0.23874 (6)0.0278 (5)
H14A0.81820.12760.25240.042*
H14B0.78780.22720.21690.042*
H14C0.70700.11120.22680.042*
C150.78024 (19)0.3455 (2)0.29057 (7)0.0295 (5)
H15A0.83870.29570.30350.044*
H15B0.74290.39680.31150.044*
H15C0.81190.40170.26960.044*
C160.4605 (2)0.3084 (2)0.48427 (7)0.0421 (7)
H16A0.41850.35190.50580.063*
H16B0.48590.37080.46400.063*
H16C0.52380.26560.49660.063*
C170.3501 (2)0.1099 (2)0.49439 (7)0.0395 (7)
H17A0.30460.04580.48070.059*
H17B0.30750.15140.51610.059*
H17C0.41460.06870.50650.059*
C180.48347 (18)0.5456 (2)0.36303 (6)0.0237 (5)
C190.42695 (19)0.6595 (2)0.35885 (6)0.0281 (5)
H190.35650.65920.34640.034*
C200.4708 (2)0.7741 (2)0.37241 (7)0.0318 (6)
H200.43050.85070.36890.038*
C210.57294 (19)0.7774 (2)0.39100 (6)0.0296 (5)
H210.60430.85510.40020.035*
C220.62764 (18)0.6625 (2)0.39566 (6)0.0250 (5)
C230.58551 (18)0.5471 (2)0.38256 (6)0.0241 (5)
H230.62520.47040.38680.029*
U11U22U33U12U13U23
O10.0265 (9)0.0227 (9)0.0221 (7)0.0030 (7)0.0026 (6)0.0018 (6)
O20.0319 (10)0.0312 (10)0.0529 (10)0.0085 (8)0.0103 (8)0.0031 (8)
O30.0332 (10)0.0266 (10)0.0319 (8)0.0075 (8)−0.0029 (7)0.0042 (7)
O40.0405 (12)0.0360 (12)0.0655 (12)−0.0072 (9)−0.0202 (9)0.0157 (9)
O50.0310 (10)0.0320 (11)0.0572 (11)−0.0071 (8)0.0037 (8)−0.0187 (8)
N10.0283 (11)0.0318 (12)0.0297 (10)−0.0046 (10)0.0018 (8)−0.0044 (8)
C10.0237 (12)0.0211 (12)0.0209 (10)−0.0029 (10)−0.0028 (8)−0.0011 (8)
C20.0260 (12)0.0187 (12)0.0232 (10)0.0014 (10)−0.0016 (8)−0.0011 (8)
C30.0248 (12)0.0183 (12)0.0246 (10)−0.0003 (10)0.0008 (8)−0.0002 (8)
C40.0275 (12)0.0234 (12)0.0228 (10)0.0001 (10)0.0001 (9)0.0000 (9)
C50.0220 (12)0.0227 (13)0.0286 (11)−0.0012 (10)−0.0045 (9)−0.0003 (9)
C60.0214 (12)0.0191 (12)0.0236 (10)−0.0002 (9)−0.0016 (8)−0.0018 (8)
C70.0198 (11)0.0230 (12)0.0261 (11)0.0015 (10)−0.0030 (8)−0.0012 (9)
C80.0229 (12)0.0224 (12)0.0262 (10)−0.0018 (10)−0.0014 (9)−0.0016 (9)
C90.0277 (13)0.0249 (13)0.0362 (12)−0.0018 (11)0.0035 (10)−0.0045 (10)
C100.0342 (14)0.0283 (14)0.0403 (13)−0.0020 (12)0.0134 (10)−0.0021 (10)
C110.0347 (14)0.0253 (13)0.0293 (11)−0.0053 (11)0.0079 (10)−0.0030 (10)
C120.0272 (12)0.0237 (13)0.0273 (11)−0.0023 (10)0.0032 (9)0.0004 (9)
C130.0194 (11)0.0232 (13)0.0253 (10)−0.0035 (10)0.0016 (8)−0.0047 (9)
C140.0305 (13)0.0264 (13)0.0266 (11)0.0005 (11)0.0043 (9)0.0008 (9)
C150.0302 (13)0.0247 (13)0.0336 (11)−0.0027 (11)−0.0029 (9)−0.0019 (10)
C160.0536 (17)0.0411 (17)0.0318 (12)−0.0137 (14)0.0024 (11)−0.0090 (11)
C170.0483 (17)0.0366 (16)0.0337 (12)−0.0024 (13)0.0133 (11)0.0013 (11)
C180.0280 (12)0.0224 (13)0.0207 (10)0.0004 (10)0.0026 (8)−0.0021 (8)
C190.0286 (13)0.0261 (14)0.0296 (11)0.0041 (11)−0.0028 (9)0.0000 (9)
C200.0393 (15)0.0213 (13)0.0349 (12)0.0077 (11)0.0005 (10)−0.0017 (10)
C210.0364 (14)0.0240 (13)0.0283 (11)−0.0024 (11)0.0042 (10)−0.0028 (9)
C220.0255 (12)0.0261 (13)0.0236 (10)−0.0030 (10)0.0021 (8)−0.0004 (8)
C230.0265 (12)0.0211 (12)0.0246 (10)0.0021 (10)0.0018 (9)−0.0004 (9)
O1—C11.378 (2)C11—C171.531 (3)
O1—C131.381 (2)C11—C161.538 (3)
O2—C91.230 (3)C11—C121.540 (3)
O3—C51.230 (3)C12—C131.492 (3)
O4—N11.227 (2)C12—H12A0.9900
O5—N11.231 (2)C12—H12B0.9900
N1—C221.472 (3)C14—H14A0.9800
C1—C61.340 (3)C14—H14B0.9800
C1—C21.488 (3)C14—H14C0.9800
C2—C31.533 (3)C15—H15A0.9800
C2—H2A0.9900C15—H15B0.9800
C2—H2B0.9900C15—H15C0.9800
C3—C141.531 (3)C16—H16A0.9800
C3—C41.532 (3)C16—H16B0.9800
C3—C151.533 (3)C16—H16C0.9800
C4—C51.507 (3)C17—H17A0.9800
C4—H4A0.9900C17—H17B0.9800
C4—H4B0.9900C17—H17C0.9800
C5—C61.474 (3)C18—C191.389 (3)
C6—C71.515 (3)C18—C231.397 (3)
C7—C81.510 (3)C19—C201.389 (3)
C7—C181.534 (3)C19—H190.9500
C7—H71.0000C20—C211.385 (3)
C8—C131.338 (3)C20—H200.9500
C8—C91.471 (3)C21—C221.388 (3)
C9—C101.510 (3)C21—H210.9500
C10—C111.528 (3)C22—C231.385 (3)
C10—H10A0.9900C23—H230.9500
C10—H10B0.9900
C1—O1—C13117.83 (17)C17—C11—C12108.93 (19)
O4—N1—O5124.0 (2)C16—C11—C12110.6 (2)
O4—N1—C22117.83 (19)C13—C12—C11112.29 (18)
O5—N1—C22118.1 (2)C13—C12—H12A109.1
C6—C1—O1123.00 (18)C11—C12—H12A109.1
C6—C1—C2125.82 (18)C13—C12—H12B109.1
O1—C1—C2111.17 (17)C11—C12—H12B109.1
C1—C2—C3112.65 (18)H12A—C12—H12B107.9
C1—C2—H2A109.1C8—C13—O1122.81 (19)
C3—C2—H2A109.1C8—C13—C12126.15 (19)
C1—C2—H2B109.1O1—C13—C12111.04 (18)
C3—C2—H2B109.1C3—C14—H14A109.5
H2A—C2—H2B107.8C3—C14—H14B109.5
C14—C3—C4109.77 (17)H14A—C14—H14B109.5
C14—C3—C15108.71 (18)C3—C14—H14C109.5
C4—C3—C15110.81 (18)H14A—C14—H14C109.5
C14—C3—C2110.01 (17)H14B—C14—H14C109.5
C4—C3—C2107.53 (18)C3—C15—H15A109.5
C15—C3—C2109.99 (17)C3—C15—H15B109.5
C5—C4—C3113.96 (17)H15A—C15—H15B109.5
C5—C4—H4A108.8C3—C15—H15C109.5
C3—C4—H4A108.8H15A—C15—H15C109.5
C5—C4—H4B108.8H15B—C15—H15C109.5
C3—C4—H4B108.8C11—C16—H16A109.5
H4A—C4—H4B107.7C11—C16—H16B109.5
O3—C5—C6120.21 (19)H16A—C16—H16B109.5
O3—C5—C4122.31 (19)C11—C16—H16C109.5
C6—C5—C4117.45 (19)H16A—C16—H16C109.5
C1—C6—C5118.54 (19)H16B—C16—H16C109.5
C1—C6—C7123.00 (18)C11—C17—H17A109.5
C5—C6—C7118.46 (18)C11—C17—H17B109.5
C8—C7—C6108.39 (18)H17A—C17—H17B109.5
C8—C7—C18111.21 (16)C11—C17—H17C109.5
C6—C7—C18112.29 (18)H17A—C17—H17C109.5
C8—C7—H7108.3H17B—C17—H17C109.5
C6—C7—H7108.3C19—C18—C23118.5 (2)
C18—C7—H7108.3C19—C18—C7121.75 (19)
C13—C8—C9118.4 (2)C23—C18—C7119.76 (19)
C13—C8—C7123.21 (19)C18—C19—C20121.7 (2)
C9—C8—C7118.37 (19)C18—C19—H19119.2
O2—C9—C8120.0 (2)C20—C19—H19119.2
O2—C9—C10122.4 (2)C21—C20—C19120.4 (2)
C8—C9—C10117.6 (2)C21—C20—H20119.8
C9—C10—C11113.83 (19)C19—C20—H20119.8
C9—C10—H10A108.8C20—C21—C22117.3 (2)
C11—C10—H10A108.8C20—C21—H21121.4
C9—C10—H10B108.8C22—C21—H21121.4
C11—C10—H10B108.8C23—C22—C21123.4 (2)
H10A—C10—H10B107.7C23—C22—N1118.3 (2)
C10—C11—C17109.7 (2)C21—C22—N1118.3 (2)
C10—C11—C16110.3 (2)C22—C23—C18118.7 (2)
C17—C11—C16109.38 (19)C22—C23—H23120.7
C10—C11—C12107.88 (18)C18—C23—H23120.7
C13—O1—C1—C66.2 (3)C8—C9—C10—C1132.6 (3)
C13—O1—C1—C2−172.70 (17)C9—C10—C11—C17−173.52 (19)
C6—C1—C2—C322.0 (3)C9—C10—C11—C1665.9 (2)
O1—C1—C2—C3−159.20 (17)C9—C10—C11—C12−55.0 (3)
C1—C2—C3—C14−167.45 (17)C10—C11—C12—C1346.8 (2)
C1—C2—C3—C4−47.9 (2)C17—C11—C12—C13165.81 (19)
C1—C2—C3—C1572.8 (2)C16—C11—C12—C13−73.9 (2)
C14—C3—C4—C5174.59 (18)C9—C8—C13—O1172.13 (18)
C15—C3—C4—C5−65.3 (2)C7—C8—C13—O1−7.0 (3)
C2—C3—C4—C554.9 (2)C9—C8—C13—C12−7.8 (3)
C3—C4—C5—O3148.0 (2)C7—C8—C13—C12173.1 (2)
C3—C4—C5—C6−34.1 (3)C1—O1—C13—C8−4.3 (3)
O1—C1—C6—C5−176.97 (18)C1—O1—C13—C12175.67 (17)
C2—C1—C6—C51.8 (3)C11—C12—C13—C8−17.4 (3)
O1—C1—C6—C73.2 (3)C11—C12—C13—O1162.64 (18)
C2—C1—C6—C7−178.1 (2)C8—C7—C18—C19−112.2 (2)
O3—C5—C6—C1−177.9 (2)C6—C7—C18—C19126.2 (2)
C4—C5—C6—C14.3 (3)C8—C7—C18—C2366.7 (2)
O3—C5—C6—C72.0 (3)C6—C7—C18—C23−54.9 (2)
C4—C5—C6—C7−175.89 (18)C23—C18—C19—C202.0 (3)
C1—C6—C7—C8−12.4 (3)C7—C18—C19—C20−179.1 (2)
C5—C6—C7—C8167.72 (18)C18—C19—C20—C21−0.6 (3)
C1—C6—C7—C18110.8 (2)C19—C20—C21—C22−0.6 (3)
C5—C6—C7—C18−69.0 (2)C20—C21—C22—C230.4 (3)
C6—C7—C8—C1314.3 (3)C20—C21—C22—N1−178.68 (18)
C18—C7—C8—C13−109.6 (2)O4—N1—C22—C23−13.9 (3)
C6—C7—C8—C9−164.80 (18)O5—N1—C22—C23166.23 (19)
C18—C7—C8—C971.3 (2)O4—N1—C22—C21165.2 (2)
C13—C8—C9—O2−176.5 (2)O5—N1—C22—C21−14.7 (3)
C7—C8—C9—O22.6 (3)C21—C22—C23—C181.0 (3)
C13—C8—C9—C100.2 (3)N1—C22—C23—C18−179.92 (17)
C7—C8—C9—C10179.30 (19)C19—C18—C23—C22−2.2 (3)
O2—C9—C10—C11−150.8 (2)C7—C18—C23—C22178.92 (18)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Chemical aspects of santalin as a histological stain.

Authors:  A Banerjee; A K Mukherjee
Journal:  Stain Technol       Date:  1981-03
  2 in total
  2 in total

1.  9-(4-Chloro-phen-yl)-4a-hy-droxy-4,4a,5,6,9,9a-hexa-hydro-3H-xanthene-1,8(2H,7H)-dione.

Authors:  Yan Yang; Weicheng Lu; Chaomei Lian; Yulin Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

2.  9-(2-Hy-droxy-6-oxocyclo-hex-1-en-1-yl)-2,3,4,9-tetra-hydro-1H-xanthen-1-one.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Antar A Abdelhamid; Aamer Saeed; Ulrich Flörke
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-28
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.