Literature DB >> 26089249

Recent developments and clinical studies utilizing engineered zinc finger nuclease technology.

Young-Il Jo1, Hyongbum Kim2,3, Suresh Ramakrishna4.   

Abstract

Efficient methods for creating targeted genetic modifications have long been sought for the investigation of gene function and the development of therapeutic modalities for various diseases, including genetic disorders. Although such modifications are possible using homologous recombination, the efficiency is extremely low. Zinc finger nucleases (ZFNs) are custom-designed artificial nucleases that make double-strand breaks at specific sequences, enabling efficient targeted genetic modifications such as corrections, additions, gene knockouts and structural variations. ZFNs are composed of two domains: (i) a DNA-binding domain comprised of zinc finger modules and (ii) the FokI nuclease domain that cleaves the DNA strand. Over 17 years after ZFNs were initially developed, a number of improvements have been made. Here, we will review the developments and future perspectives of ZFN technology. For example, ZFN activity and specificity have been significantly enhanced by modifying the DNA-binding domain and FokI cleavage domain. Advances in culture methods, such as the application of a cold shock and the use of small molecules that affect ZFN stability, have also increased ZFN activity. Furthermore, ZFN-induced mutant cells can be enriched using episomal surrogate reporters. Additionally, we discuss several ongoing clinical studies that are based on ZFN-mediated genome editing in humans. These breakthroughs have substantially facilitated the use of ZFNs in research, medicine and biotechnology.

Entities:  

Keywords:  Farm animals; Pre-clinical trials; Programmable nucleases; Targeted genetic modifications; Therapeutic applications; ZFN architecture; ZFN delivery; ZFN modification

Mesh:

Substances:

Year:  2015        PMID: 26089249     DOI: 10.1007/s00018-015-1956-5

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  109 in total

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2.  High-frequency homologous recombination in plants mediated by zinc-finger nucleases.

Authors:  David A Wright; Jeffrey A Townsend; Ronnie Joe Winfrey; Phillip A Irwin; Jyothi Rajagopal; Patricia M Lonosky; Bradford D Hall; Michael D Jondle; Daniel F Voytas
Journal:  Plant J       Date:  2005-11       Impact factor: 6.417

3.  A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors.

Authors:  Xiangdong Meng; Michael H Brodsky; Scot A Wolfe
Journal:  Nat Biotechnol       Date:  2005-07-24       Impact factor: 54.908

4.  TAP-deficient human iPS cell-derived myeloid cell lines as unlimited cell source for dendritic cell-like antigen-presenting cells.

Authors:  M Haruta; Y Tomita; A Yuno; K Matsumura; T Ikeda; K Takamatsu; E Haga; C Koba; Y Nishimura; S Senju
Journal:  Gene Ther       Date:  2012-08-09       Impact factor: 5.250

5.  Efficient generation of a biallelic knockout in pigs using zinc-finger nucleases.

Authors:  Janet Hauschild; Bjoern Petersen; Yolanda Santiago; Anna-Lisa Queisser; Joseph W Carnwath; Andrea Lucas-Hahn; Lei Zhang; Xiangdong Meng; Philip D Gregory; Reinhard Schwinzer; Gregory J Cost; Heiner Niemann
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

6.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

Review 7.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.

Authors:  Michael R Lieber
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 8.  Genetically modified pigs to model human diseases.

Authors:  Tatiana Flisikowska; Alexander Kind; Angelika Schnieke
Journal:  J Appl Genet       Date:  2014-02       Impact factor: 3.240

9.  CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes.

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Journal:  Protein Cell       Date:  2015-04-18       Impact factor: 14.870

10.  Targeted disruption of Tbc1d20 with zinc-finger nucleases causes cataracts and testicular abnormalities in mice.

Authors:  Anna Kyunglim Park; Ryan P Liegel; Adam Ronchetti; Allison D Ebert; Aron Geurts; Duska J Sidjanin
Journal:  BMC Genet       Date:  2014-12-05       Impact factor: 2.797

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  10 in total

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Authors:  T M Geel; M H J Ruiters; R H Cool; L Halby; D C Voshart; L Andrade Ruiz; K E Niezen-Koning; P B Arimondo; M G Rots
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

Review 2.  CRISPR Editing Technology in Biological and Biomedical Investigation.

Authors:  Martyn K White; Rafal Kaminski; Won-Bin Young; Pamela C Roehm; Kamel Khalili
Journal:  J Cell Biochem       Date:  2017-07-04       Impact factor: 4.429

Review 3.  Genome editing: the road of CRISPR/Cas9 from bench to clinic.

Authors:  Ayman Eid; Magdy M Mahfouz
Journal:  Exp Mol Med       Date:  2016-10-14       Impact factor: 8.718

4.  Long-Term Assessment of AAV-Mediated Zinc Finger Nuclease Expression in the Mouse Brain.

Authors:  Muzna Zahur; Johan Tolö; Mathias Bähr; Sebastian Kügler
Journal:  Front Mol Neurosci       Date:  2017-05-23       Impact factor: 5.639

5.  Gene Editing in Human Pluripotent Stem Cells: Choosing the Correct Path.

Authors:  Amar M Singh; Valeriya V Adjan Steffey; Tseten Yeshi; Daniel W Allison
Journal:  J Stem Cell Regen Biol       Date:  2015-11-05

Review 6.  In Vivo Delivery Systems for Therapeutic Genome Editing.

Authors:  Luyao Wang; Fangfei Li; Lei Dang; Chao Liang; Chao Wang; Bing He; Jin Liu; Defang Li; Xiaohao Wu; Xuegong Xu; Aiping Lu; Ge Zhang
Journal:  Int J Mol Sci       Date:  2016-04-27       Impact factor: 5.923

Review 7.  Genome Engineering with TALE and CRISPR Systems in Neuroscience.

Authors:  Han B Lee; Brynn N Sundberg; Ashley N Sigafoos; Karl J Clark
Journal:  Front Genet       Date:  2016-04-06       Impact factor: 4.599

8.  CRISPRs for Optimal Targeting: Delivery of CRISPR Components as DNA, RNA, and Protein into Cultured Cells and Single-Cell Embryos.

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Journal:  Hum Gene Ther       Date:  2016-05-12       Impact factor: 5.695

Review 9.  CRISPR/Cas9 and cancer targets: future possibilities and present challenges.

Authors:  Martyn K White; Kamel Khalili
Journal:  Oncotarget       Date:  2016-03-15

Review 10.  CRISPR/Cas9-mediated genome editing: From basic research to translational medicine.

Authors:  Filipe V Jacinto; Wolfgang Link; Bibiana I Ferreira
Journal:  J Cell Mol Med       Date:  2020-02-25       Impact factor: 5.310

  10 in total

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