Literature DB >> 21969038

Variation in the mutation rate across mammalian genomes.

Alan Hodgkinson1, Adam Eyre-Walker.   

Abstract

It has been known for many years that the mutation rate varies across the genome. However, only with the advent of large genomic data sets is the full extent of this variation becoming apparent. The mutation rate varies over many different scales, from adjacent sites to whole chromosomes, with the strongest variation seen at the smallest scales. Some of these patterns have clear mechanistic bases, but much of the rate variation remains unexplained, and some of it is deeply perplexing. Variation in the mutation rate has important implications in evolutionary biology and underexplored implications for our understanding of hereditary disease and cancer.

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Year:  2011        PMID: 21969038     DOI: 10.1038/nrg3098

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  111 in total

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Authors:  Matthew T Webster; Nick G C Smith; Martin J Lercher; Hans Ellegren
Journal:  Mol Biol Evol       Date:  2004-06-02       Impact factor: 16.240

2.  High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.

Authors:  Alan P Boyle; Lingyun Song; Bum-Kyu Lee; Darin London; Damian Keefe; Ewan Birney; Vishwanath R Iyer; Gregory E Crawford; Terrence S Furey
Journal:  Genome Res       Date:  2010-11-24       Impact factor: 9.043

3.  The scale of mutational variation in the murid genome.

Authors:  Daniel J Gaffney; Peter D Keightley
Journal:  Genome Res       Date:  2005-07-15       Impact factor: 9.043

4.  Inference of mutation parameters and selective constraint in mammalian coding sequences by approximate Bayesian computation.

Authors:  Peter D Keightley; Lél Eöry; Daniel L Halligan; Mark Kirkpatrick
Journal:  Genetics       Date:  2011-02-01       Impact factor: 4.562

5.  Evolution of the mutation rate.

Authors:  Michael Lynch
Journal:  Trends Genet       Date:  2010-06-30       Impact factor: 11.639

6.  Mutation rates differ among regions of the mammalian genome.

Authors:  K H Wolfe; P M Sharp; W H Li
Journal:  Nature       Date:  1989-01-19       Impact factor: 49.962

Review 7.  Synonymous but not the same: the causes and consequences of codon bias.

Authors:  Joshua B Plotkin; Grzegorz Kudla
Journal:  Nat Rev Genet       Date:  2010-11-23       Impact factor: 53.242

8.  A comprehensive catalogue of somatic mutations from a human cancer genome.

Authors:  Erin D Pleasance; R Keira Cheetham; Philip J Stephens; David J McBride; Sean J Humphray; Chris D Greenman; Ignacio Varela; Meng-Lay Lin; Gonzalo R Ordóñez; Graham R Bignell; Kai Ye; Julie Alipaz; Markus J Bauer; David Beare; Adam Butler; Richard J Carter; Lina Chen; Anthony J Cox; Sarah Edkins; Paula I Kokko-Gonzales; Niall A Gormley; Russell J Grocock; Christian D Haudenschild; Matthew M Hims; Terena James; Mingming Jia; Zoya Kingsbury; Catherine Leroy; John Marshall; Andrew Menzies; Laura J Mudie; Zemin Ning; Tom Royce; Ole B Schulz-Trieglaff; Anastassia Spiridou; Lucy A Stebbings; Lukasz Szajkowski; Jon Teague; David Williamson; Lynda Chin; Mark T Ross; Peter J Campbell; David R Bentley; P Andrew Futreal; Michael R Stratton
Journal:  Nature       Date:  2009-12-16       Impact factor: 49.962

9.  Human mutation rate associated with DNA replication timing.

Authors:  John A Stamatoyannopoulos; Ivan Adzhubei; Robert E Thurman; Gregory V Kryukov; Sergei M Mirkin; Shamil R Sunyaev
Journal:  Nat Genet       Date:  2009-03-15       Impact factor: 38.330

10.  Low nucleotide diversity in man.

Authors:  W H Li; L A Sadler
Journal:  Genetics       Date:  1991-10       Impact factor: 4.562

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  189 in total

1.  Quantifying the variation in the effective population size within a genome.

Authors:  Toni I Gossmann; Megan Woolfit; Adam Eyre-Walker
Journal:  Genetics       Date:  2011-09-27       Impact factor: 4.562

2.  Evolution patterns of Peg3 and H19-ICR.

Authors:  Joomyeong Kim
Journal:  Genomics       Date:  2018-11-29       Impact factor: 5.736

3.  Segmenting the human genome based on states of neutral genetic divergence.

Authors:  Prabhani Kuruppumullage Don; Guruprasad Ananda; Francesca Chiaromonte; Kateryna D Makova
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-19       Impact factor: 11.205

4.  Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

Authors:  Zhonghua Zhang; Linyong Mao; Huiming Chen; Fengjiao Bu; Guangcun Li; Jinjing Sun; Shuai Li; Honghe Sun; Chen Jiao; Rachel Blakely; Junsong Pan; Run Cai; Ruibang Luo; Yves Van de Peer; Evert Jacobsen; Zhangjun Fei; Sanwen Huang
Journal:  Plant Cell       Date:  2015-05-22       Impact factor: 11.277

5.  Cytosine Methylation Affects the Mutability of Neighboring Nucleotides in Germline and Soma.

Authors:  Vassili Kusmartsev; Magdalena Drożdż; Benjamin Schuster-Böckler; Tobias Warnecke
Journal:  Genetics       Date:  2020-02-20       Impact factor: 4.562

6.  Testing whether metazoan tyrosine loss was driven by selection against promiscuous phosphorylation.

Authors:  Siddharth Pandya; Travis J Struck; Brian K Mannakee; Mary Paniscus; Ryan N Gutenkunst
Journal:  Mol Biol Evol       Date:  2014-10-13       Impact factor: 16.240

7.  Parent-progeny sequencing indicates higher mutation rates in heterozygotes.

Authors:  Sihai Yang; Long Wang; Ju Huang; Xiaohui Zhang; Yang Yuan; Jian-Qun Chen; Laurence D Hurst; Dacheng Tian
Journal:  Nature       Date:  2015-07-15       Impact factor: 49.962

8.  Using BioBin to explore rare variant population stratification.

Authors:  Carrie B Moore; John R Wallace; Alex T Frase; Sarah A Pendergrass; Marylyn D Ritchie
Journal:  Pac Symp Biocomput       Date:  2013

9.  No gene-specific optimization of mutation rate in Escherichia coli.

Authors:  Xiaoshu Chen; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2013-03-26       Impact factor: 16.240

Review 10.  Stalling the engine of resistance: targeting cancer metabolism to overcome therapeutic resistance.

Authors:  Ethan B Butler; Yuhua Zhao; Cristina Muñoz-Pinedo; Jianrong Lu; Ming Tan
Journal:  Cancer Res       Date:  2013-04-22       Impact factor: 12.701

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