Literature DB >> 24793760

The polyadenylation code: a unified model for the regulation of mRNA alternative polyadenylation.

Ryan Davis1, Yongsheng Shi.   

Abstract

The majority of eukaryotic genes produce multiple mRNA isoforms with distinct 3' ends through a process called mRNA alternative polyadenylation (APA). Recent studies have demonstrated that APA is dynamically regulated during development and in response to environmental stimuli. A number of mechanisms have been described for APA regulation. In this review, we attempt to integrate all the known mechanisms into a unified model. This model not only explains most of previous results, but also provides testable predictions that will improve our understanding of the mechanistic details of APA regulation. Finally, we briefly discuss the known and putative functions of APA regulation.

Keywords:  Alternative polyadenylation (APA); Polyadenylation site (PAS); mRNA

Mesh:

Substances:

Year:  2014        PMID: 24793760      PMCID: PMC4076599          DOI: 10.1631/jzus.B1400076

Source DB:  PubMed          Journal:  J Zhejiang Univ Sci B        ISSN: 1673-1581            Impact factor:   3.066


  64 in total

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Review 2.  Pre-mRNA 3'-end processing complex assembly and function.

Authors:  Serena Chan; Eun-A Choi; Yongsheng Shi
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-10-18       Impact factor: 9.957

Review 3.  Signals for pre-mRNA cleavage and polyadenylation.

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Journal:  Wiley Interdiscip Rev RNA       Date:  2011-10-19       Impact factor: 9.957

4.  RNA polymerase II kinetics in polo polyadenylation signal selection.

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Journal:  Cell Stem Cell       Date:  2012-03-02       Impact factor: 24.633

6.  Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq.

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Journal:  RNA       Date:  2011-02-22       Impact factor: 4.942

7.  The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites.

Authors:  Mathias Jenal; Ran Elkon; Fabricio Loayza-Puch; Gijs van Haaften; Uwe Kühn; Fiona M Menzies; Joachim A F Oude Vrielink; Arnold J Bos; Jarno Drost; Koos Rooijers; David C Rubinsztein; Reuven Agami
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  10 in total

1.  Fine gene expression regulation by minor sequence variations downstream of the polyadenylation signal.

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2.  Transcription: the epicenter of gene expression.

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Journal:  J Zhejiang Univ Sci B       Date:  2014-05       Impact factor: 3.066

Review 3.  mRNA stability in the nucleus.

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4.  Suppression of premature transcription termination leads to reduced mRNA isoform diversity and neurodegeneration.

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5.  Template-Independent Poly(A)-Tail Decay and RNASEL as Potential Cellular Biomarkers for Prostate Cancer Development.

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6.  Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut.

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7.  Poly(A) code analyses reveal key determinants for tissue-specific mRNA alternative polyadenylation.

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Journal:  RNA       Date:  2016-04-19       Impact factor: 4.942

8.  CFIm25 in Solid Tumors: Current Research Progress.

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Journal:  Technol Cancer Res Treat       Date:  2020 Jan-Dec

9.  A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.

Authors:  Andreas J Gruber; Ralf Schmidt; Andreas R Gruber; Georges Martin; Souvik Ghosh; Manuel Belmadani; Walter Keller; Mihaela Zavolan
Journal:  Genome Res       Date:  2016-07-05       Impact factor: 9.043

10.  Identification and Characterization of Transcripts Regulated by Circadian Alternative Polyadenylation in Mouse Liver.

Authors:  Kerry L Gendreau; Benjamin A Unruh; Chuanli Zhou; Shihoko Kojima
Journal:  G3 (Bethesda)       Date:  2018-11-06       Impact factor: 3.154

  10 in total

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