Literature DB >> 21914869

Draft genome sequence of the marine sediment-derived actinomycete Streptomyces xinghaiensis NRRL B24674T.

Xinqing Zhao1, Tianhong Yang.   

Abstract

Actinobacteria are a rich source of novel natural products. We recently characterized Streptomyces xinghaiensis NRRL B24674(T) as a novel species of marine origin. Here we report the draft genome sequence of this species. This is the first validly published marine streptomycete for which a genome sequence has been presented.

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Year:  2011        PMID： 21914869      PMCID： PMC3187413          DOI： 10.1128/JB.05689-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

Review 1.  New natural product biosynthetic chemistry discovered by genome mining.

Authors:  Christophe Corre; Gregory L Challis
Journal:  Nat Prod Rep       Date:  2009-05-22       Impact factor: 13.423

2.  Draft genome sequence of the marine Streptomyces sp. strain PP-C42, isolated from the Baltic Sea.

Authors:  Longjiang Fan; Yun Liu; Zefeng Li; Heike I Baumann; Katrin Kleinschmidt; Wanzhi Ye; Johannes F Imhoff; Michael Kleine; Daguang Cai
Journal:  J Bacteriol       Date:  2011-05-13       Impact factor: 3.490

3.  The ribostamycin biosynthetic gene cluster in Streptomyces ribosidificus: comparison with butirosin biosynthesis.

Authors:  Bimala Subba; Madan Kumar Kharel; Hei Chan Lee; Kwangkyoung Liou; Byung-Gee Kim; Jae Kyung Sohng
Journal:  Mol Cells       Date:  2005-08-31       Impact factor: 5.034

4.  Draft genome sequence of the marine bacterium Streptomyces griseoaurantiacus M045, which produces novel manumycin-type antibiotics with a pABA core component.

Authors:  Fuchao Li; Peng Jiang; Huajun Zheng; Shengyue Wang; Guoping Zhao; Song Qin; Zhaopu Liu
Journal:  J Bacteriol       Date:  2011-05-06       Impact factor: 3.490

5.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

6.  Streptomyces xinghaiensis sp. nov., isolated from marine sediment.

Authors:  Xin-Qing Zhao; Wen-Jun Li; Wen-Ce Jiao; Yan Li; Wen-Jie Yuan; Yu-Qin Zhang; Hans-Peter Klenk; Joo-Won Suh; Feng-Wu Bai
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-23       Impact factor: 2.747

Review 7.  Chasing the treasures of the sea - bacterial marine natural products.

Authors:  Tobias A M Gulder; Bradley S Moore
Journal:  Curr Opin Microbiol       Date:  2009-05-28       Impact factor: 7.934

8.  SOAP: short oligonucleotide alignment program.

Authors:  Ruiqiang Li; Yingrui Li; Karsten Kristiansen; Jun Wang
Journal:  Bioinformatics       Date:  2008-01-28       Impact factor: 6.937

9.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  CVTree: a phylogenetic tree reconstruction tool based on whole genomes.

Authors:  Ji Qi; Hong Luo; Bailin Hao
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971
  10 in total
  4 in total

1.  Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters.

Authors:  Michelle A Schorn; Mohammad M Alanjary; Kristen Aguinaldo; Anton Korobeynikov; Sheila Podell; Nastassia Patin; Tommie Lincecum; Paul R Jensen; Nadine Ziemert; Bradley S Moore
Journal:  Microbiology       Date:  2016-10-27       Impact factor: 2.777

2.  Genome mining reveals the biosynthetic potential of the marine-derived strain Streptomyces marokkonensis M10.

Authors:  Liangyu Chen; Ying-Mi Lai; Yu-Liang Yang; Xinqing Zhao
Journal:  Synth Syst Biotechnol       Date:  2016-04-06

3.  Genome Mining of the Marine Actinomycete Streptomyces sp. DUT11 and Discovery of Tunicamycins as Anti-complement Agents.

Authors:  Xiao-Na Xu; Liang-Yu Chen; Chao Chen; Ya-Jie Tang; Feng-Wu Bai; Chun Su; Xin-Qing Zhao
Journal:  Front Microbiol       Date:  2018-06-20       Impact factor: 5.640

4.  High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway.

Authors:  Gro Elin Kjæreng Bjerga; Erik Hjerde; Concetta De Santi; Adele Kim Williamson; Arne Oskar Smalås; Nils Peder Willassen; Bjørn Altermark
Journal:  Stand Genomic Sci       Date:  2014-03-01
  4 in total

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