Literature DB >> 21551298

Draft genome sequence of the marine bacterium Streptomyces griseoaurantiacus M045, which produces novel manumycin-type antibiotics with a pABA core component.

Fuchao Li1, Peng Jiang, Huajun Zheng, Shengyue Wang, Guoping Zhao, Song Qin, Zhaopu Liu.   

Abstract

Streptomyces griseoaurantiacus M045, isolated from marine sediment, produces manumycin and chinikomycin antibiotics. Here we present a high-quality draft genome sequence of S. griseoaurantiacus M045, the first marine Streptomyces species to be sequenced and annotated. The genome encodes several gene clusters for biosynthesis of secondary metabolites and has provided insight into genomic islands linking secondary metabolism to functional adaptation in marine S. griseoaurantiacus M045.

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Year:  2011        PMID: 21551298      PMCID: PMC3133271          DOI: 10.1128/JB.05053-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  17 in total

1.  IslandPath: aiding detection of genomic islands in prokaryotes.

Authors:  William Hsiao; Ivan Wan; Steven J Jones; Fiona S L Brinkman
Journal:  Bioinformatics       Date:  2003-02-12       Impact factor: 6.937

2.  Prediction of lipoprotein signal peptides in Gram-negative bacteria.

Authors:  Agnieszka S Juncker; Hanni Willenbrock; Gunnar Von Heijne; Søren Brunak; Henrik Nielsen; Anders Krogh
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

3.  ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability.

Authors:  Masafumi Arai; Hironori Mitsuke; Masami Ikeda; Jun-Xiong Xia; Takashi Kikuchi; Masanobu Satake; Toshio Shimizu
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  Improved prediction of signal peptides: SignalP 3.0.

Authors:  Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne; Søren Brunak
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

5.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

6.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

7.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

8.  Biochemical and genetic insights into asukamycin biosynthesis.

Authors:  Zhe Rui; Katerina Petrícková; Frantisek Skanta; Stanislav Pospísil; Yanling Yang; Chung-Yung Chen; Shih-Feng Tsai; Heinz G Floss; Miroslav Petrícek; Tin-Wein Yu
Journal:  J Biol Chem       Date:  2010-06-03       Impact factor: 5.157

9.  Further studies on the biosynthesis of the manumycin-type antibiotic, asukamycin, and the chemical synthesis of protoasukamycin.

Authors:  Yiding Hu; Heinz G Floss
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

10.  Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria.

Authors:  Kevin Penn; Caroline Jenkins; Markus Nett; Daniel W Udwary; Erin A Gontang; Ryan P McGlinchey; Brian Foster; Alla Lapidus; Sheila Podell; Eric E Allen; Bradley S Moore; Paul R Jensen
Journal:  ISME J       Date:  2009-05-28       Impact factor: 10.302

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  11 in total

1.  Draft genome sequence of the marine sediment-derived actinomycete Streptomyces xinghaiensis NRRL B24674T.

Authors:  Xinqing Zhao; Tianhong Yang
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

2.  Draft genome sequence of marine Streptomyces sp. strain W007, which produces angucyclinone antibiotics with a benz[a]anthracene skeleton.

Authors:  Song Qin; Hongyu Zhang; Fuchao Li; Benwei Zhu; Huajun Zheng
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

Review 3.  Structure and Candidate Biosynthetic Gene Cluster of a Manumycin-Type Metabolite from Salinispora pacifica.

Authors:  Gabriel Castro-Falcón; Kaitlin E Creamer; Alexander B Chase; Min Cheol Kim; Douglas Sweeney; Evgenia Glukhov; William Fenical; Paul R Jensen
Journal:  J Nat Prod       Date:  2022-03-09       Impact factor: 4.803

4.  Characterization of antifungal metabolite phenazine from rice rhizosphere fluorescent pseudomonads (FPs) and their effect on sheath blight of rice.

Authors:  Nithya Karmegham; Shanmugaiah Vellasamy; Balasubramanian Natesan; Mahaveer P Sharma; Dunia A Al Farraj; Mohamed S Elshikh
Journal:  Saudi J Biol Sci       Date:  2020-10-15       Impact factor: 4.219

5.  Biodiversity of Actinomycetes associated with Caribbean sponges and their potential for natural product discovery.

Authors:  Jan Vicente; Allison Stewart; Bongkeun Song; Russell T Hill; Jeffrey L Wright
Journal:  Mar Biotechnol (NY)       Date:  2013-01-24       Impact factor: 3.619

6.  Antagonistic potential of native strain Streptomyces aurantiogriseus VSMGT1014 against sheath blight of rice disease.

Authors:  Hariharan Harikrishnan; Vellasamy Shanmugaiah; Natesan Balasubramanian; Mahaveer P Sharma; Simeon O Kotchoni
Journal:  World J Microbiol Biotechnol       Date:  2014-10-11       Impact factor: 3.312

7.  The -omics Era- Toward a Systems-Level Understanding of Streptomyces.

Authors:  Zhan Zhou; Jianying Gu; Yi-Ling Du; Yong-Quan Li; Yufeng Wang
Journal:  Curr Genomics       Date:  2011-09       Impact factor: 2.236

8.  -Genomic data mining of the marine actinobacteria Streptomyces sp. H-KF8 unveils insights into multi-stress related genes and metabolic pathways involved in antimicrobial synthesis.

Authors:  Agustina Undabarrena; Juan A Ugalde; Michael Seeger; Beatriz Cámara
Journal:  PeerJ       Date:  2017-02-14       Impact factor: 2.984

9.  High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway.

Authors:  Gro Elin Kjæreng Bjerga; Erik Hjerde; Concetta De Santi; Adele Kim Williamson; Arne Oskar Smalås; Nils Peder Willassen; Bjørn Altermark
Journal:  Stand Genomic Sci       Date:  2014-03-01

10.  Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level.

Authors:  Xinpeng Tian; Zhewen Zhang; Tingting Yang; Meili Chen; Jie Li; Fei Chen; Jin Yang; Wenjie Li; Bing Zhang; Zhang Zhang; Jiayan Wu; Changsheng Zhang; Lijuan Long; Jingfa Xiao
Journal:  Front Microbiol       Date:  2016-06-27       Impact factor: 5.640

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