Literature DB >> 21571991

Draft genome sequence of the marine Streptomyces sp. strain PP-C42, isolated from the Baltic Sea.

Longjiang Fan1, Yun Liu, Zefeng Li, Heike I Baumann, Katrin Kleinschmidt, Wanzhi Ye, Johannes F Imhoff, Michael Kleine, Daguang Cai.   

Abstract

Streptomyces, a branch of aerobic Gram-positive bacteria, represents the largest genus of actinobacteria. The streptomycetes are characterized by a complex secondary metabolism and produce over two-thirds of the clinically used natural antibiotics today. Here we report the draft genome sequence of a Streptomyces strain, PP-C42, isolated from the marine environment. A subset of unique genes and gene clusters for diverse secondary metabolites as well as antimicrobial peptides could be identified from the genome, showing great promise as a source for novel bioactive compounds.

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Year:  2011        PMID: 21571991      PMCID: PMC3133317          DOI: 10.1128/JB.05097-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  16 in total

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2.  A fast, lock-free approach for efficient parallel counting of occurrences of k-mers.

Authors:  Guillaume Marçais; Carl Kingsford
Journal:  Bioinformatics       Date:  2011-01-07       Impact factor: 6.937

3.  PenBase, the shrimp antimicrobial peptide penaeidin database: sequence-based classification and recommended nomenclature.

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Journal:  Dev Comp Immunol       Date:  2006       Impact factor: 3.636

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  Evidence for indigenous Streptomyces populations in a marine environment determined with a 16S rRNA probe.

Authors:  M A Moran; L T Rutherford; R E Hodson
Journal:  Appl Environ Microbiol       Date:  1995-10       Impact factor: 4.792

6.  Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana Trench.

Authors:  Wasu Pathom-Aree; James E M Stach; Alan C Ward; Koki Horikoshi; Alan T Bull; Michael Goodfellow
Journal:  Extremophiles       Date:  2006-03-15       Impact factor: 2.395

7.  Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.

Authors:  Yasuo Ohnishi; Jun Ishikawa; Hirofumi Hara; Hirokazu Suzuki; Miwa Ikenoya; Haruo Ikeda; Atsushi Yamashita; Masahira Hattori; Sueharu Horinouchi
Journal:  J Bacteriol       Date:  2008-03-28       Impact factor: 3.490

8.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  CyBase: a database of cyclic protein sequences and structures, with applications in protein discovery and engineering.

Authors:  Conan K L Wang; Quentin Kaas; Laurent Chiche; David J Craik
Journal:  Nucleic Acids Res       Date:  2007-11-05       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

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  11 in total

1.  Draft genome sequence of the marine sediment-derived actinomycete Streptomyces xinghaiensis NRRL B24674T.

Authors:  Xinqing Zhao; Tianhong Yang
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

2.  Collection of antimicrobial peptides database and its derivatives: Applications and beyond.

Authors:  Faiza Hanif Waghu; Susan Idicula-Thomas
Journal:  Protein Sci       Date:  2019-09-30       Impact factor: 6.725

3.  Ecological Strategies Behind the Selection of Cultivable Actinomycete Strains from the Yucatan Peninsula for the Discovery of Secondary Metabolites with Antibiotic Activity.

Authors:  Yessica Parera-Valadez; Alejandro Yam-Puc; Lluvia Korynthia López-Aguiar; Rocío Borges-Argáez; Mario Alberto Figueroa-Saldivar; Mirbella Cáceres-Farfán; Norma Angélica Márquez-Velázquez; Alejandra Prieto-Davó
Journal:  Microb Ecol       Date:  2019-02-14       Impact factor: 4.552

4.  Genome sequence of Streptomyces sp. strain TOR3209, a rhizosphere microecology regulator isolated from tomato rhizosphere.

Authors:  Dong Hu; Xiaozhi Li; Yueli Chang; Huan He; Cuimian Zhang; Nan Jia; Hongtao Li; Zhanwu Wang
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

5.  Biodiversity of Actinomycetes associated with Caribbean sponges and their potential for natural product discovery.

Authors:  Jan Vicente; Allison Stewart; Bongkeun Song; Russell T Hill; Jeffrey L Wright
Journal:  Mar Biotechnol (NY)       Date:  2013-01-24       Impact factor: 3.619

6.  The -omics Era- Toward a Systems-Level Understanding of Streptomyces.

Authors:  Zhan Zhou; Jianying Gu; Yi-Ling Du; Yong-Quan Li; Yufeng Wang
Journal:  Curr Genomics       Date:  2011-09       Impact factor: 2.236

7.  Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation.

Authors:  Jonathan L Klassen; Cameron R Currie
Journal:  BMC Genomics       Date:  2012-01-10       Impact factor: 3.969

8.  Strain-level diversity of secondary metabolism in Streptomyces albus.

Authors:  Ryan F Seipke
Journal:  PLoS One       Date:  2015-01-30       Impact factor: 3.240

9.  Champacyclin, a new cyclic octapeptide from Streptomyces strain C42 isolated from the Baltic Sea.

Authors:  Alexander Pesic; Heike I Baumann; Katrin Kleinschmidt; Paul Ensle; Jutta Wiese; Roderich D Süssmuth; Johannes F Imhoff
Journal:  Mar Drugs       Date:  2013-12-02       Impact factor: 5.118

10.  High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway.

Authors:  Gro Elin Kjæreng Bjerga; Erik Hjerde; Concetta De Santi; Adele Kim Williamson; Arne Oskar Smalås; Nils Peder Willassen; Bjørn Altermark
Journal:  Stand Genomic Sci       Date:  2014-03-01
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