Literature DB >> 19636446

New natural product biosynthetic chemistry discovered by genome mining.

Christophe Corre1, Gregory L Challis.   

Abstract

Analyses of plant and microbial genome sequences have revealed many genes and gene clusters encoding proteins similar to those known to be involved in the biosynthesis of structurally-complex natural products. Many of these genes and gene clusters do not direct the production of known metabolites of the organism in which they are found. Others represent novel gene clusters that direct the biosynthesis of known natural products. This article highlights several examples of new biosynthetic chemistry discovered in the course of investigating such gene clusters.

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Year:  2009        PMID: 19636446     DOI: 10.1039/b713024b

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  48 in total

1.  Genome mining in Streptomyces avermitilis: cloning and characterization of SAV_76, the synthase for a new sesquiterpene, avermitilol.

Authors:  Wayne K W Chou; Immacolata Fanizza; Takuma Uchiyama; Mamoru Komatsu; Haruo Ikeda; David E Cane
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

2.  Genome mining in Streptomyces clavuligerus: expression and biochemical characterization of two new cryptic sesquiterpene synthases.

Authors:  Yunfeng Hu; Wayne K W Chou; Russell Hopson; David E Cane
Journal:  Chem Biol       Date:  2011-01-28

Review 3.  Streptomyces and Saccharopolyspora hosts for heterologous expression of secondary metabolite gene clusters.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2010-05-14       Impact factor: 3.346

Review 4.  Current approaches to exploit actinomycetes as a source of novel natural products.

Authors:  Olga Genilloud; Ignacio González; Oscar Salazar; Jesus Martín; José Rubén Tormo; Francisca Vicente
Journal:  J Ind Microbiol Biotechnol       Date:  2010-10-08       Impact factor: 3.346

5.  Genome-based characterization of two prenylation steps in the assembly of the stephacidin and notoamide anticancer agents in a marine-derived Aspergillus sp.

Authors:  Yousong Ding; Jeffrey R de Wet; James Cavalcoli; Shengying Li; Thomas J Greshock; Kenneth A Miller; Jennifer M Finefield; James D Sunderhaus; Timothy J McAfoos; Sachiko Tsukamoto; Robert M Williams; David H Sherman
Journal:  J Am Chem Soc       Date:  2010-09-15       Impact factor: 15.419

6.  MS/MS networking guided analysis of molecule and gene cluster families.

Authors:  Don Duy Nguyen; Cheng-Hsuan Wu; Wilna J Moree; Anne Lamsa; Marnix H Medema; Xiling Zhao; Ronnie G Gavilan; Marystella Aparicio; Librada Atencio; Chanaye Jackson; Javier Ballesteros; Joel Sanchez; Jeramie D Watrous; Vanessa V Phelan; Corine van de Wiel; Roland D Kersten; Samina Mehnaz; René De Mot; Elizabeth A Shank; Pep Charusanti; Harish Nagarajan; Brendan M Duggan; Bradley S Moore; Nuno Bandeira; Bernhard Ø Palsson; Kit Pogliano; Marcelino Gutiérrez; Pieter C Dorrestein
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

7.  MbtH homology codes to identify gifted microbes for genome mining.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2013-11-07       Impact factor: 3.346

8.  Classification, prediction, and verification of the regioselectivity of fungal polyketide synthase product template domains.

Authors:  Yanran Li; Image Image Image; Wei Xu; Image Image; Yi Tang; Image Image
Journal:  J Biol Chem       Date:  2010-05-17       Impact factor: 5.157

Review 9.  Function of MbtH homologs in nonribosomal peptide biosynthesis and applications in secondary metabolite discovery.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2011-08-09       Impact factor: 3.346

Review 10.  Genome-guided discovery of diverse natural products from Burkholderia sp.

Authors:  Xiangyang Liu; Yi-Qiang Cheng
Journal:  J Ind Microbiol Biotechnol       Date:  2013-11-09       Impact factor: 3.346

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