Literature DB >> 21890744

Fitness landscapes: an alternative theory for the dominance of mutation.

Federico Manna1, Guillaume Martin, Thomas Lenormand.   

Abstract

Deleterious mutations tend to be recessive. Several theories, notably those of Fisher (based on selection) and Wright (based on metabolism), have been put forward to explain this pattern. Despite a long-lasting debate, the matter remains unresolved. This debate has focused on the average dominance of mutations. However, we also know very little about the distribution of dominance coefficients among mutations, and about its variation across environments. In this article we present a new approach to predicting this distribution. Our approach is based on a phenotypic fitness landscape model. First, we show that under a very broad range of conditions (and environments), the average dominance of mutation of small effects should be approximately one-quarter as long as adaptation of organisms to their environment can be well described by stabilizing selection on an arbitrary set of phenotypic traits. Second, the theory allows predicting the whole distribution of dominance coefficients among mutants. Because it provides quantitative rather than qualitative predictions, this theory can be directly compared to data. We found that its prediction on mean dominance (average dominance close to 0.25) agreed well with the data, based on a meta-analysis of dominance data for mildly deleterious mutations. However, a simple landscape model does not account for the dominance of mutations of large effects and we provide possible extension of the theory for this class of mutations. Because dominance is a central parameter for evolutionary theory, and because these predictions are quantitative, they set the stage for a wide range of applications and further empirical tests.

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Year:  2011        PMID: 21890744      PMCID: PMC3213354          DOI: 10.1534/genetics.111.132944

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  54 in total

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2.  The fitness effects of spontaneous mutations in Caenorhabditis elegans.

Authors:  L L Vassilieva; A M Hook; M Lynch
Journal:  Evolution       Date:  2000-08       Impact factor: 3.694

Review 3.  Perspective: Evolution and detection of genetic robustness.

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Journal:  Evolution       Date:  2003-09       Impact factor: 3.694

4.  The advantages of segregation and the evolution of sex.

Authors:  Sarah P Otto
Journal:  Genetics       Date:  2003-07       Impact factor: 4.562

5.  Fisher's model and the genomics of adaptation: restricted pleiotropy, heterogenous mutation, and parallel evolution.

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Journal:  Evolution       Date:  2010-11       Impact factor: 3.694

6.  Recombination and the evolution of diploidy.

Authors:  S P Otto; D B Goldstein
Journal:  Genetics       Date:  1992-07       Impact factor: 4.562

Review 7.  A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species.

Authors:  Guillaume Martin; Thomas Lenormand
Journal:  Evolution       Date:  2006-05       Impact factor: 3.694

8.  The fitness effect of mutations across environments: a survey in light of fitness landscape models.

Authors:  Guillaume Martin; Thomas Lenormand
Journal:  Evolution       Date:  2006-12       Impact factor: 3.694

Review 9.  The genetics of inbreeding depression.

Authors:  Deborah Charlesworth; John H Willis
Journal:  Nat Rev Genet       Date:  2009-11       Impact factor: 53.242

10.  Ploidy and the evolution of endosperm of flowering plants.

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Journal:  Genetics       Date:  2009-11-23       Impact factor: 4.562

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  53 in total

1.  Evolution of haploid selection in predominantly diploid organisms.

Authors:  Sarah P Otto; Michael F Scott; Simone Immler
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-15       Impact factor: 11.205

2.  Environment determines epistatic patterns for a ssDNA virus.

Authors:  S Brian Caudle; Craig R Miller; Darin R Rokyta
Journal:  Genetics       Date:  2013-11-08       Impact factor: 4.562

3.  Obstruction of adaptation in diploids by recessive, strongly deleterious alleles.

Authors:  Zoe June Assaf; Dmitri A Petrov; Jamie R Blundell
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

4.  The evolution of selfing is accompanied by reduced efficacy of selection and purging of deleterious mutations.

Authors:  Ramesh Arunkumar; Rob W Ness; Stephen I Wright; Spencer C H Barrett
Journal:  Genetics       Date:  2014-12-30       Impact factor: 4.562

Review 5.  Causes of natural variation in fitness: evidence from studies of Drosophila populations.

Authors:  Brian Charlesworth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-08       Impact factor: 11.205

6.  The distribution of epistasis on simple fitness landscapes.

Authors:  Christelle Fraïsse; John J Welch
Journal:  Biol Lett       Date:  2019-04-26       Impact factor: 3.703

7.  The Relative Contributions of the X Chromosome and Autosomes to Local Adaptation.

Authors:  Clémentine Lasne; Carla M Sgrò; Tim Connallon
Journal:  Genetics       Date:  2017-01-06       Impact factor: 4.562

8.  The Nonstationary Dynamics of Fitness Distributions: Asexual Model with Epistasis and Standing Variation.

Authors:  Guillaume Martin; Lionel Roques
Journal:  Genetics       Date:  2016-10-21       Impact factor: 4.562

9.  Estimating the Fitness Effect of Deleterious Mutations During the Two Phases of the Life Cycle: A New Method Applied to the Root-Rot Fungus Heterobasidion parviporum.

Authors:  Pierre-Henri Clergeot; Nicolas O Rode; Sylvain Glémin; Mikael Brandström Durling; Katarina Ihrmark; Åke Olson
Journal:  Genetics       Date:  2018-12-31       Impact factor: 4.562

10.  Local adaptation and the evolution of inversions on sex chromosomes and autosomes.

Authors:  Tim Connallon; Colin Olito; Ludovic Dutoit; Homa Papoli; Filip Ruzicka; Lengxob Yong
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-10-05       Impact factor: 6.237

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