Literature DB >> 21886157

Human metabolic individuality in biomedical and pharmaceutical research.

So-Youn Shin1, Ann-Kristin Petersen2, Nicole Soranzo1, Christian Gieger2, Karsten Suhre3,4,5, Robert P Mohney6, David Meredith7, Brigitte Wägele3,8, Elisabeth Altmaier3, Panos Deloukas1, Jeanette Erdmann9, Elin Grundberg1,10, Christopher J Hammond10, Martin Hrabé de Angelis11,12, Gabi Kastenmüller3, Anna Köttgen13, Florian Kronenberg14, Massimo Mangino10, Christa Meisinger15, Thomas Meitinger16,17, Hans-Werner Mewes3,8, Michael V Milburn6, Cornelia Prehn11, Johannes Raffler3,4, Janina S Ried1, Werner Römisch-Margl3, Nilesh J Samani18, Kerrin S Small10, H-Erich Wichmann19,20,21, Guangju Zhai10, Thomas Illig22, Tim D Spector10, Jerzy Adamski11.   

Abstract

Genome-wide association studies (GWAS) have identified many risk loci for complex diseases, but effect sizes are typically small and information on the underlying biological processes is often lacking. Associations with metabolic traits as functional intermediates can overcome these problems and potentially inform individualized therapy. Here we report a comprehensive analysis of genotype-dependent metabolic phenotypes using a GWAS with non-targeted metabolomics. We identified 37 genetic loci associated with blood metabolite concentrations, of which 25 show effect sizes that are unusually high for GWAS and account for 10-60% differences in metabolite levels per allele copy. Our associations provide new functional insights for many disease-related associations that have been reported in previous studies, including those for cardiovascular and kidney disorders, type 2 diabetes, cancer, gout, venous thromboembolism and Crohn's disease. The study advances our knowledge of the genetic basis of metabolic individuality in humans and generates many new hypotheses for biomedical and pharmaceutical research.

Entities:  

Mesh:

Year:  2011        PMID: 21886157      PMCID: PMC3832838          DOI: 10.1038/nature10354

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  50 in total

1.  Getting biological about the genetics of diabetes.

Authors:  Christopher B Newgard; Alan D Attie
Journal:  Nat Med       Date:  2010-04       Impact factor: 53.440

2.  A pharmacogenetic study of docetaxel and thalidomide in patients with castration-resistant prostate cancer using the DMET genotyping platform.

Authors:  J F Deeken; T Cormier; D K Price; T M Sissung; S M Steinberg; K Tran; D J Liewehr; W L Dahut; X Miao; W D Figg
Journal:  Pharmacogenomics J       Date:  2009-12-29       Impact factor: 3.550

3.  Inborn variation in metabolism.

Authors:  Vamsi K Mootha; Joel N Hirschhorn
Journal:  Nat Genet       Date:  2010-02       Impact factor: 38.330

4.  Integrated, nontargeted ultrahigh performance liquid chromatography/electrospray ionization tandem mass spectrometry platform for the identification and relative quantification of the small-molecule complement of biological systems.

Authors:  Anne M Evans; Corey D DeHaven; Tom Barrett; Matt Mitchell; Eric Milgram
Journal:  Anal Chem       Date:  2009-08-15       Impact factor: 6.986

5.  A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.

Authors:  Nicole Soranzo; Tim D Spector; Massimo Mangino; Brigitte Kühnel; Augusto Rendon; Alexander Teumer; Christina Willenborg; Benjamin Wright; Li Chen; Mingyao Li; Perttu Salo; Benjamin F Voight; Philippa Burns; Roman A Laskowski; Yali Xue; Stephan Menzel; David Altshuler; John R Bradley; Suzannah Bumpstead; Mary-Susan Burnett; Joseph Devaney; Angela Döring; Roberto Elosua; Stephen E Epstein; Wendy Erber; Mario Falchi; Stephen F Garner; Mohammed J R Ghori; Alison H Goodall; Rhian Gwilliam; Hakon H Hakonarson; Alistair S Hall; Naomi Hammond; Christian Hengstenberg; Thomas Illig; Inke R König; Christopher W Knouff; Ruth McPherson; Olle Melander; Vincent Mooser; Matthias Nauck; Markku S Nieminen; Christopher J O'Donnell; Leena Peltonen; Simon C Potter; Holger Prokisch; Daniel J Rader; Catherine M Rice; Robert Roberts; Veikko Salomaa; Jennifer Sambrook; Stefan Schreiber; Heribert Schunkert; Stephen M Schwartz; Jovana Serbanovic-Canic; Juha Sinisalo; David S Siscovick; Klaus Stark; Ida Surakka; Jonathan Stephens; John R Thompson; Uwe Völker; Henry Völzke; Nicholas A Watkins; George A Wells; H-Erich Wichmann; David A Van Heel; Chris Tyler-Smith; Swee Lay Thein; Sekar Kathiresan; Markus Perola; Muredach P Reilly; Alexandre F R Stewart; Jeanette Erdmann; Nilesh J Samani; Christa Meisinger; Andreas Greinacher; Panos Deloukas; Willem H Ouwehand; Christian Gieger
Journal:  Nat Genet       Date:  2009-10-11       Impact factor: 38.330

6.  A genome-wide perspective of genetic variation in human metabolism.

Authors:  Thomas Illig; Christian Gieger; Guangju Zhai; Werner Römisch-Margl; Rui Wang-Sattler; Cornelia Prehn; Elisabeth Altmaier; Gabi Kastenmüller; Bernet S Kato; Hans-Werner Mewes; Thomas Meitinger; Martin Hrabé de Angelis; Florian Kronenberg; Nicole Soranzo; H-Erich Wichmann; Tim D Spector; Jerzy Adamski; Karsten Suhre
Journal:  Nat Genet       Date:  2009-12-27       Impact factor: 38.330

7.  Genetic loci influencing kidney function and chronic kidney disease.

Authors:  John C Chambers; Weihua Zhang; Graham M Lord; Pim van der Harst; Debbie A Lawlor; Joban S Sehmi; Daniel P Gale; Mark N Wass; Kourosh R Ahmadi; Stephan J L Bakker; Jacqui Beckmann; Henk J G Bilo; Murielle Bochud; Morris J Brown; Mark J Caulfield; John M C Connell; H Terence Cook; Ioana Cotlarciuc; George Davey Smith; Ranil de Silva; Guohong Deng; Olivier Devuyst; Lambert D Dikkeschei; Nada Dimkovic; Mark Dockrell; Anna Dominiczak; Shah Ebrahim; Thomas Eggermann; Martin Farrall; Luigi Ferrucci; Jurgen Floege; Nita G Forouhi; Ron T Gansevoort; Xijin Han; Bo Hedblad; Jaap J Homan van der Heide; Bouke G Hepkema; Maria Hernandez-Fuentes; Elina Hypponen; Toby Johnson; Paul E de Jong; Nanne Kleefstra; Vasiliki Lagou; Marta Lapsley; Yun Li; Ruth J F Loos; Jian'an Luan; Karin Luttropp; Céline Maréchal; Olle Melander; Patricia B Munroe; Louise Nordfors; Afshin Parsa; Leena Peltonen; Brenda W Penninx; Esperanza Perucha; Anneli Pouta; Inga Prokopenko; Paul J Roderick; Aimo Ruokonen; Nilesh J Samani; Serena Sanna; Martin Schalling; David Schlessinger; Georg Schlieper; Marc A J Seelen; Alan R Shuldiner; Marketa Sjögren; Johannes H Smit; Harold Snieder; Nicole Soranzo; Timothy D Spector; Peter Stenvinkel; Michael J E Sternberg; Ramasamyiyer Swaminathan; Toshiko Tanaka; Lielith J Ubink-Veltmaat; Manuela Uda; Peter Vollenweider; Chris Wallace; Dawn Waterworth; Klaus Zerres; Gerard Waeber; Nicholas J Wareham; Patrick H Maxwell; Mark I McCarthy; Marjo-Riitta Jarvelin; Vincent Mooser; Goncalo R Abecasis; Liz Lightstone; James Scott; Gerjan Navis; Paul Elliott; Jaspal S Kooner
Journal:  Nat Genet       Date:  2010-04-11       Impact factor: 38.330

8.  New loci associated with kidney function and chronic kidney disease.

Authors:  Anna Köttgen; Cristian Pattaro; Carsten A Böger; Christian Fuchsberger; Matthias Olden; Nicole L Glazer; Afshin Parsa; Xiaoyi Gao; Qiong Yang; Albert V Smith; Jeffrey R O'Connell; Man Li; Helena Schmidt; Toshiko Tanaka; Aaron Isaacs; Shamika Ketkar; Shih-Jen Hwang; Andrew D Johnson; Abbas Dehghan; Alexander Teumer; Guillaume Paré; Elizabeth J Atkinson; Tanja Zeller; Kurt Lohman; Marilyn C Cornelis; Nicole M Probst-Hensch; Florian Kronenberg; Anke Tönjes; Caroline Hayward; Thor Aspelund; Gudny Eiriksdottir; Lenore J Launer; Tamara B Harris; Evadnie Rampersaud; Braxton D Mitchell; Dan E Arking; Eric Boerwinkle; Maksim Struchalin; Margherita Cavalieri; Andrew Singleton; Francesco Giallauria; Jeffrey Metter; Ian H de Boer; Talin Haritunians; Thomas Lumley; David Siscovick; Bruce M Psaty; M Carola Zillikens; Ben A Oostra; Mary Feitosa; Michael Province; Mariza de Andrade; Stephen T Turner; Arne Schillert; Andreas Ziegler; Philipp S Wild; Renate B Schnabel; Sandra Wilde; Thomas F Munzel; Tennille S Leak; Thomas Illig; Norman Klopp; Christa Meisinger; H-Erich Wichmann; Wolfgang Koenig; Lina Zgaga; Tatijana Zemunik; Ivana Kolcic; Cosetta Minelli; Frank B Hu; Asa Johansson; Wilmar Igl; Ghazal Zaboli; Sarah H Wild; Alan F Wright; Harry Campbell; David Ellinghaus; Stefan Schreiber; Yurii S Aulchenko; Janine F Felix; Fernando Rivadeneira; Andre G Uitterlinden; Albert Hofman; Medea Imboden; Dorothea Nitsch; Anita Brandstätter; Barbara Kollerits; Lyudmyla Kedenko; Reedik Mägi; Michael Stumvoll; Peter Kovacs; Mladen Boban; Susan Campbell; Karlhans Endlich; Henry Völzke; Heyo K Kroemer; Matthias Nauck; Uwe Völker; Ozren Polasek; Veronique Vitart; Sunita Badola; Alexander N Parker; Paul M Ridker; Sharon L R Kardia; Stefan Blankenberg; Yongmei Liu; Gary C Curhan; Andre Franke; Thierry Rochat; Bernhard Paulweber; Inga Prokopenko; Wei Wang; Vilmundur Gudnason; Alan R Shuldiner; Josef Coresh; Reinhold Schmidt; Luigi Ferrucci; Michael G Shlipak; Cornelia M van Duijn; Ingrid Borecki; Bernhard K Krämer; Igor Rudan; Ulf Gyllensten; James F Wilson; Jacqueline C Witteman; Peter P Pramstaller; Rainer Rettig; Nick Hastie; Daniel I Chasman; W H Kao; Iris M Heid; Caroline S Fox
Journal:  Nat Genet       Date:  2010-04-11       Impact factor: 38.330

9.  Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions.

Authors:  Soumya Raychaudhuri; Robert M Plenge; Elizabeth J Rossin; Aylwin C Y Ng; Shaun M Purcell; Pamela Sklar; Edward M Scolnick; Ramnik J Xavier; David Altshuler; Mark J Daly
Journal:  PLoS Genet       Date:  2009-06-26       Impact factor: 5.917

10.  New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.

Authors:  Josée Dupuis; Claudia Langenberg; Inga Prokopenko; Richa Saxena; Nicole Soranzo; Anne U Jackson; Eleanor Wheeler; Nicole L Glazer; Nabila Bouatia-Naji; Anna L Gloyn; Cecilia M Lindgren; Reedik Mägi; Andrew P Morris; Joshua Randall; Toby Johnson; Paul Elliott; Denis Rybin; Gudmar Thorleifsson; Valgerdur Steinthorsdottir; Peter Henneman; Harald Grallert; Abbas Dehghan; Jouke Jan Hottenga; Christopher S Franklin; Pau Navarro; Kijoung Song; Anuj Goel; John R B Perry; Josephine M Egan; Taina Lajunen; Niels Grarup; Thomas Sparsø; Alex Doney; Benjamin F Voight; Heather M Stringham; Man Li; Stavroula Kanoni; Peter Shrader; Christine Cavalcanti-Proença; Meena Kumari; Lu Qi; Nicholas J Timpson; Christian Gieger; Carina Zabena; Ghislain Rocheleau; Erik Ingelsson; Ping An; Jeffrey O'Connell; Jian'an Luan; Amanda Elliott; Steven A McCarroll; Felicity Payne; Rosa Maria Roccasecca; François Pattou; Praveen Sethupathy; Kristin Ardlie; Yavuz Ariyurek; Beverley Balkau; Philip Barter; John P Beilby; Yoav Ben-Shlomo; Rafn Benediktsson; Amanda J Bennett; Sven Bergmann; Murielle Bochud; Eric Boerwinkle; Amélie Bonnefond; Lori L Bonnycastle; Knut Borch-Johnsen; Yvonne Böttcher; Eric Brunner; Suzannah J Bumpstead; Guillaume Charpentier; Yii-Der Ida Chen; Peter Chines; Robert Clarke; Lachlan J M Coin; Matthew N Cooper; Marilyn Cornelis; Gabe Crawford; Laura Crisponi; Ian N M Day; Eco J C de Geus; Jerome Delplanque; Christian Dina; Michael R Erdos; Annette C Fedson; Antje Fischer-Rosinsky; Nita G Forouhi; Caroline S Fox; Rune Frants; Maria Grazia Franzosi; Pilar Galan; Mark O Goodarzi; Jürgen Graessler; Christopher J Groves; Scott Grundy; Rhian Gwilliam; Ulf Gyllensten; Samy Hadjadj; Göran Hallmans; Naomi Hammond; Xijing Han; Anna-Liisa Hartikainen; Neelam Hassanali; Caroline Hayward; Simon C Heath; Serge Hercberg; Christian Herder; Andrew A Hicks; David R Hillman; Aroon D Hingorani; Albert Hofman; Jennie Hui; Joe Hung; Bo Isomaa; Paul R V Johnson; Torben Jørgensen; Antti Jula; Marika Kaakinen; Jaakko Kaprio; Y Antero Kesaniemi; Mika Kivimaki; Beatrice Knight; Seppo Koskinen; Peter Kovacs; Kirsten Ohm Kyvik; G Mark Lathrop; Debbie A Lawlor; Olivier Le Bacquer; Cécile Lecoeur; Yun Li; Valeriya Lyssenko; Robert Mahley; Massimo Mangino; Alisa K Manning; María Teresa Martínez-Larrad; Jarred B McAteer; Laura J McCulloch; Ruth McPherson; Christa Meisinger; David Melzer; David Meyre; Braxton D Mitchell; Mario A Morken; Sutapa Mukherjee; Silvia Naitza; Narisu Narisu; Matthew J Neville; Ben A Oostra; Marco Orrù; Ruth Pakyz; Colin N A Palmer; Giuseppe Paolisso; Cristian Pattaro; Daniel Pearson; John F Peden; Nancy L Pedersen; Markus Perola; Andreas F H Pfeiffer; Irene Pichler; Ozren Polasek; Danielle Posthuma; Simon C Potter; Anneli Pouta; Michael A Province; Bruce M Psaty; Wolfgang Rathmann; Nigel W Rayner; Kenneth Rice; Samuli Ripatti; Fernando Rivadeneira; Michael Roden; Olov Rolandsson; Annelli Sandbaek; Manjinder Sandhu; Serena Sanna; Avan Aihie Sayer; Paul Scheet; Laura J Scott; Udo Seedorf; Stephen J Sharp; Beverley Shields; Gunnar Sigurethsson; Eric J G Sijbrands; Angela Silveira; Laila Simpson; Andrew Singleton; Nicholas L Smith; Ulla Sovio; Amy Swift; Holly Syddall; Ann-Christine Syvänen; Toshiko Tanaka; Barbara Thorand; Jean Tichet; Anke Tönjes; Tiinamaija Tuomi; André G Uitterlinden; Ko Willems van Dijk; Mandy van Hoek; Dhiraj Varma; Sophie Visvikis-Siest; Veronique Vitart; Nicole Vogelzangs; Gérard Waeber; Peter J Wagner; Andrew Walley; G Bragi Walters; Kim L Ward; Hugh Watkins; Michael N Weedon; Sarah H Wild; Gonneke Willemsen; Jaqueline C M Witteman; John W G Yarnell; Eleftheria Zeggini; Diana Zelenika; Björn Zethelius; Guangju Zhai; Jing Hua Zhao; M Carola Zillikens; Ingrid B Borecki; Ruth J F Loos; Pierre Meneton; Patrik K E Magnusson; David M Nathan; Gordon H Williams; Andrew T Hattersley; Kaisa Silander; Veikko Salomaa; George Davey Smith; Stefan R Bornstein; Peter Schwarz; Joachim Spranger; Fredrik Karpe; Alan R Shuldiner; Cyrus Cooper; George V Dedoussis; Manuel Serrano-Ríos; Andrew D Morris; Lars Lind; Lyle J Palmer; Frank B Hu; Paul W Franks; Shah Ebrahim; Michael Marmot; W H Linda Kao; James S Pankow; Michael J Sampson; Johanna Kuusisto; Markku Laakso; Torben Hansen; Oluf Pedersen; Peter Paul Pramstaller; H Erich Wichmann; Thomas Illig; Igor Rudan; Alan F Wright; Michael Stumvoll; Harry Campbell; James F Wilson; Richard N Bergman; Thomas A Buchanan; Francis S Collins; Karen L Mohlke; Jaakko Tuomilehto; Timo T Valle; David Altshuler; Jerome I Rotter; David S Siscovick; Brenda W J H Penninx; Dorret I Boomsma; Panos Deloukas; Timothy D Spector; Timothy M Frayling; Luigi Ferrucci; Augustine Kong; Unnur Thorsteinsdottir; Kari Stefansson; Cornelia M van Duijn; Yurii S Aulchenko; Antonio Cao; Angelo Scuteri; David Schlessinger; Manuela Uda; Aimo Ruokonen; Marjo-Riitta Jarvelin; Dawn M Waterworth; Peter Vollenweider; Leena Peltonen; Vincent Mooser; Goncalo R Abecasis; Nicholas J Wareham; Robert Sladek; Philippe Froguel; Richard M Watanabe; James B Meigs; Leif Groop; Michael Boehnke; Mark I McCarthy; Jose C Florez; Inês Barroso
Journal:  Nat Genet       Date:  2010-01-17       Impact factor: 38.330

View more
  430 in total

1.  The human circadian metabolome.

Authors:  Robert Dallmann; Antoine U Viola; Leila Tarokh; Christian Cajochen; Steven A Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-31       Impact factor: 11.205

2.  Association between gout and polymorphisms in GCKR in male Han Chinese.

Authors:  Jing Wang; Shiguo Liu; Binbin Wang; Zhimin Miao; Lin Han; Nan Chu; Kun Zhang; Dongmei Meng; Changgui Li; Xu Ma
Journal:  Hum Genet       Date:  2012-03-07       Impact factor: 4.132

3.  Diving through the "-omics": the case for deep phenotyping and systems epidemiology.

Authors:  Robin Haring; Henri Wallaschofski
Journal:  OMICS       Date:  2012-02-09

Review 4.  Cellular genomics for complex traits.

Authors:  Emmanouil T Dermitzakis
Journal:  Nat Rev Genet       Date:  2012-02-14       Impact factor: 53.242

Review 5.  Cellular metabolism and disease: what do metabolic outliers teach us?

Authors:  Ralph J DeBerardinis; Craig B Thompson
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

Review 6.  Metabolomics as a key integrator for "omic" advancement of personalized medicine and future therapies.

Authors:  Andrea D Eckhart; Kirk Beebe; Mike Milburn
Journal:  Clin Transl Sci       Date:  2012-06       Impact factor: 4.689

7.  Hierarchical clustering analysis of blood plasma lipidomics profiles from mono- and dizygotic twin families.

Authors:  Harmen H M Draisma; Theo H Reijmers; Jacqueline J Meulman; Jan van der Greef; Thomas Hankemeier; Dorret I Boomsma
Journal:  Eur J Hum Genet       Date:  2012-06-20       Impact factor: 4.246

8.  Joint effects of fatty acid desaturase 1 polymorphisms and dietary polyunsaturated fatty acid intake on circulating fatty acid proportions.

Authors:  Juan Juan; Hongyan Huang; Xia Jiang; Andres V Ardisson Korat; Mingyang Song; Qi Sun; Walter C Willett; Majken K Jensen; Peter Kraft
Journal:  Am J Clin Nutr       Date:  2018-05-01       Impact factor: 7.045

9.  Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.

Authors:  Yong Li; Peggy Sekula; Matthias Wuttke; Judith Wahrheit; Birgit Hausknecht; Ulla T Schultheiss; Wolfram Gronwald; Pascal Schlosser; Sara Tucci; Arif B Ekici; Ute Spiekerkoetter; Florian Kronenberg; Kai-Uwe Eckardt; Peter J Oefner; Anna Köttgen
Journal:  J Am Soc Nephrol       Date:  2018-03-15       Impact factor: 10.121

10.  Serum biomarkers of habitual coffee consumption may provide insight into the mechanism underlying the association between coffee consumption and colorectal cancer.

Authors:  Kristin A Guertin; Erikka Loftfield; Simina M Boca; Joshua N Sampson; Steven C Moore; Qian Xiao; Wen-Yi Huang; Xiaoqin Xiong; Neal D Freedman; Amanda J Cross; Rashmi Sinha
Journal:  Am J Clin Nutr       Date:  2015-03-11       Impact factor: 7.045

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.