Literature DB >> 22320900

Diving through the "-omics": the case for deep phenotyping and systems epidemiology.

Robin Haring1, Henri Wallaschofski.   

Abstract

Enabled by diverse high-throughput technologies, the rapidly evolving field of "-omics sciences" offers the potential to study health and disease in breadth and depth at the human population level. We have recently linked genomics and metabolomics to present the first genome-wide association study of metabolic traits in human urine providing new insights into the functional background of chronic kidney disease. We propose systems epidemiology as a novel approach to study the complexities of human pathophysiology by integrating various population-level omic-metrics and to identify new trans-omic biomarkers.

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Year:  2012        PMID: 22320900      PMCID: PMC3339382          DOI: 10.1089/omi.2011.0108

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  21 in total

1.  Network medicine--from obesity to the "diseasome".

Authors:  Albert-László Barabási
Journal:  N Engl J Med       Date:  2007-07-25       Impact factor: 91.245

2.  The human disease network.

Authors:  Kwang-Il Goh; Michael E Cusick; David Valle; Barton Childs; Marc Vidal; Albert-László Barabási
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

3.  Shattuck lecture--clinical research to clinical practice--lost in translation?

Authors:  Claude Lenfant
Journal:  N Engl J Med       Date:  2003-08-28       Impact factor: 91.245

4.  Correlation network analysis for data integration and biomarker selection.

Authors:  Aram Adourian; Ezra Jennings; Raji Balasubramanian; Wade M Hines; Doris Damian; Thomas N Plasterer; Clary B Clish; Paul Stroobant; Robert McBurney; Elwin R Verheij; Ivana Bobeldijk; Jan van der Greef; Johan Lindberg; Kerstin Kenne; Ulf Andersson; Heike Hellmold; Kerstin Nilsson; Hugh Salter; Ina Schuppe-Koistinen
Journal:  Mol Biosyst       Date:  2008-01-16

Review 5.  'Deep phenotyping': characterizing populations in the era of genomics and systems biology.

Authors:  Russell P Tracy
Journal:  Curr Opin Lipidol       Date:  2008-04       Impact factor: 4.776

6.  The chemical genomic portrait of yeast: uncovering a phenotype for all genes.

Authors:  Maureen E Hillenmeyer; Eula Fung; Jan Wildenhain; Sarah E Pierce; Shawn Hoon; William Lee; Michael Proctor; Robert P St Onge; Mike Tyers; Daphne Koller; Russ B Altman; Ronald W Davis; Corey Nislow; Guri Giaever
Journal:  Science       Date:  2008-04-18       Impact factor: 47.728

7.  Human metabolic individuality in biomedical and pharmaceutical research.

Authors:  So-Youn Shin; Ann-Kristin Petersen; Nicole Soranzo; Christian Gieger; Karsten Suhre; Robert P Mohney; David Meredith; Brigitte Wägele; Elisabeth Altmaier; Panos Deloukas; Jeanette Erdmann; Elin Grundberg; Christopher J Hammond; Martin Hrabé de Angelis; Gabi Kastenmüller; Anna Köttgen; Florian Kronenberg; Massimo Mangino; Christa Meisinger; Thomas Meitinger; Hans-Werner Mewes; Michael V Milburn; Cornelia Prehn; Johannes Raffler; Janina S Ried; Werner Römisch-Margl; Nilesh J Samani; Kerrin S Small; H-Erich Wichmann; Guangju Zhai; Thomas Illig; Tim D Spector; Jerzy Adamski
Journal:  Nature       Date:  2011-08-31       Impact factor: 49.962

8.  Statistically integrated metabonomic-proteomic studies on a human prostate cancer xenograft model in mice.

Authors:  Mattias Rantalainen; Olivier Cloarec; Olaf Beckonert; I D Wilson; David Jackson; Robert Tonge; Rachel Rowlinson; Steve Rayner; Janice Nickson; Robert W Wilkinson; Jonathan D Mills; Johan Trygg; Jeremy K Nicholson; Elaine Holmes
Journal:  J Proteome Res       Date:  2006-10       Impact factor: 4.466

9.  The spread of obesity in a large social network over 32 years.

Authors:  Nicholas A Christakis; James H Fowler
Journal:  N Engl J Med       Date:  2007-07-25       Impact factor: 91.245

10.  Human disease classification in the postgenomic era: a complex systems approach to human pathobiology.

Authors:  Joseph Loscalzo; Isaac Kohane; Albert-Laszlo Barabasi
Journal:  Mol Syst Biol       Date:  2007-07-10       Impact factor: 11.429

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  24 in total

1.  Systems biology approaches to epidemiological studies of complex diseases.

Authors:  Hongzhe Li
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2013-09-09

Review 2.  Perspectives on systems biology applications in diabetic kidney disease.

Authors:  Claudiu V Komorowsky; Frank C Brosius; Subramaniam Pennathur; Matthias Kretzler
Journal:  J Cardiovasc Transl Res       Date:  2012-06-26       Impact factor: 4.132

Review 3.  The Future of Cardiovascular Epidemiology.

Authors:  Ramachandran S Vasan; Emelia J Benjamin
Journal:  Circulation       Date:  2016-06-21       Impact factor: 29.690

4.  Genome-wide association studies with metabolomics.

Authors:  Jerzy Adamski
Journal:  Genome Med       Date:  2012-04-30       Impact factor: 11.117

5.  Application of Artificial Intelligence to Clinical Practice in Inflammatory Bowel Disease - What the Clinician Needs to Know.

Authors:  David Chen; Clifton Fulmer; Ilyssa O Gordon; Sana Syed; Ryan W Stidham; Niels Vande Casteele; Yi Qin; Katherine Falloon; Benjamin L Cohen; Robert Wyllie; Florian Rieder
Journal:  J Crohns Colitis       Date:  2022-03-14       Impact factor: 10.020

6.  Transforming epidemiology for 21st century medicine and public health.

Authors:  Muin J Khoury; Tram Kim Lam; John P A Ioannidis; Patricia Hartge; Margaret R Spitz; Julie E Buring; Stephen J Chanock; Robert T Croyle; Katrina A Goddard; Geoffrey S Ginsburg; Zdenko Herceg; Robert A Hiatt; Robert N Hoover; David J Hunter; Barnet S Kramer; Michael S Lauer; Jeffrey A Meyerhardt; Olufunmilayo I Olopade; Julie R Palmer; Thomas A Sellers; Daniela Seminara; David F Ransohoff; Timothy R Rebbeck; Georgia Tourassi; Deborah M Winn; Ann Zauber; Sheri D Schully
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2013-03-05       Impact factor: 4.254

7.  Systems Epidemiology: A New Direction in Nutrition and Metabolic Disease Research.

Authors:  Marilyn C Cornelis; Frank B Hu
Journal:  Curr Nutr Rep       Date:  2013-12

8.  A network-based approach to visualize prevalence and progression of metabolic syndrome components.

Authors:  Robin Haring; Martin Rosvall; Uwe Völker; Henry Völzke; Heyo Kroemer; Matthias Nauck; Henri Wallaschofski
Journal:  PLoS One       Date:  2012-06-19       Impact factor: 3.240

9.  A SULT2A1 genetic variant identified by GWAS as associated with low serum DHEAS does not impact on the actual DHEA/DHEAS ratio.

Authors:  Robin Haring; Henri Wallaschofski; Alexander Teumer; Heyo Kroemer; Angela E Taylor; Cedric H L Shackleton; Matthias Nauck; Uwe Völker; Georg Homuth; Wiebke Arlt
Journal:  J Mol Endocrinol       Date:  2012-12-31       Impact factor: 5.098

10.  Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics.

Authors:  Ettje F Tigchelaar; Alexandra Zhernakova; Jackie A M Dekens; Gerben Hermes; Agnieszka Baranska; Zlatan Mujagic; Morris A Swertz; Angélica M Muñoz; Patrick Deelen; Maria C Cénit; Lude Franke; Salome Scholtens; Ronald P Stolk; Cisca Wijmenga; Edith J M Feskens
Journal:  BMJ Open       Date:  2015-08-28       Impact factor: 2.692

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