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Literature DB >> 4000943

A new principle of RNA folding based on pseudoknotting.

Abstract

Tertiary interactions involving hairpin or interior loops of RNA can lead to extended quasi-continuous double helical stem regions, consisting of coaxially stacked segments of duplex RNA, bridged by single-stranded connections. This type of compact folding plays a role in various strategic regions of RNA molecules. Their role in ribosome functioning, RNA splicing and recognition of tRNA-like structures is discussed.

Mesh：

Substances：
RNA, Viral
RNA, Transfer

Year: 1985 PMID： 4000943 PMCID： PMC341107 DOI： 10.1093/nar/13.5.1717

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

29 in total

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Authors: R Nussinov; A B Jacobson
Journal: Proc Natl Acad Sci U S A Date: 1980-11 Impact factor: 11.205

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Authors: G J Quigley; A Rich
Journal: Science Date: 1976-11-19 Impact factor: 47.728

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Authors: S Altman
Journal: Cell Date: 1984-02 Impact factor: 41.582

Review 4. Prokaryotic and eukaryotic 5 S RNAs: primary sequences and proposed secondary structures.

Authors: R P Singhal; J K Shaw
Journal: Prog Nucleic Acid Res Mol Biol Date: 1983

Review 5. The structure of ribosomal RNA and its organization relative to ribosomal protein.

Authors: R Brimacombe; P Maly; C Zwieb
Journal: Prog Nucleic Acid Res Mol Biol Date: 1983

6. Making ends meet: a model for RNA splicing in fungal mitochondria.

Authors: R W Davies; R B Waring; J A Ray; T A Brown; C Scazzocchio
Journal: Nature Date: 1982-12-23 Impact factor: 49.962

7. Adenine-guanine base pairing ribosomal RNA.

Authors: W Traub; J L Sussman
Journal: Nucleic Acids Res Date: 1982-04-24 Impact factor: 16.971

8. Are snRNPs involved in splicing?

Authors: M R Lerner; J A Boyle; S M Mount; S L Wolin; J A Steitz
Journal: Nature Date: 1980-01-10 Impact factor: 49.962

9. Computer simulation of DNA double-helix dynamics.

Authors: M Levitt
Journal: Cold Spring Harb Symp Quant Biol Date: 1983

10. Three-dimensional models of the tRNA-like 3' termini of some plant viral RNAs.

Authors: K Rietveld; C W Pleij; L Bosch
Journal: EMBO J Date: 1983 Impact factor: 11.598

174 in total

1. Programmed ribosomal frameshifting: much ado about knotting!

Authors: S L Alam; J F Atkins; R F Gesteland
Journal: Proc Natl Acad Sci U S A Date: 1999-12-07 Impact factor: 11.205

2. Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency.

Authors: Y G Kim; L Su; S Maas; A O'Neill; A Rich
Journal: Proc Natl Acad Sci U S A Date: 1999-12-07 Impact factor: 11.205

3. PseudoBase: a database with RNA pseudoknots.

Authors: F H van Batenburg; A P Gultyaev; C W Pleij; J Ng; J Oliehoek
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

4. PseudoBase: structural information on RNA pseudoknots.

Authors: F H van Batenburg; A P Gultyaev; C W Pleij
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

5. A phylogenetically conserved hairpin-type 3' untranslated region pseudoknot functions in coronavirus RNA replication.

Authors: G D Williams; R Y Chang; D A Brian
Journal: J Virol Date: 1999-10 Impact factor: 5.103

6. Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme.

Authors: H Isambert; E D Siggia
Journal: Proc Natl Acad Sci U S A Date: 2000-06-06 Impact factor: 11.205

7. More surprises in translation: initiation without the initiator tRNA.

Authors: U L RajBhandary
Journal: Proc Natl Acad Sci U S A Date: 2000-02-15 Impact factor: 11.205

8. Arrangement of the central pseudoknot region of 16S rRNA in the 30S ribosomal subunit determined by site-directed 4-thiouridine crosslinking.

Authors: D I Juzumiene; P Wollenzien
Journal: RNA Date: 2001-01 Impact factor: 4.942

Review 9. Historical overview of research on the tobacco mosaic virus genome: genome organization, infectivity and gene manipulation.

Authors: Y Okada
Journal: Philos Trans R Soc Lond B Biol Sci Date: 1999-03-29 Impact factor: 6.237

10. An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2.

Authors: J A Holland; M R Hansen; Z Du; D W Hoffman
Journal: RNA Date: 1999-02 Impact factor: 4.942