Literature DB >> 17655648

Transposon Display identifies individual transposable elements in high copy number lines.

D Van den Broeck1, T Maes, M Sauer, J Zethof, P De Keukeleire, M D'hauw, M Van Montagu, T Gerats.   

Abstract

The dTph1 transposable element family of Petunia hybrida line W138 consists of between 100 and 200 members. A strategy that allows simultaneous detection of individual elements is described. Sequences flanking dTph1 elements are amplified by means of a ligation-mediated PCR. The resulting fragments are locus-specific and can be analysed by polyacrylamide gel electrophoresis. One of the applications of Transposon Display is the isolation of dTph1-tagged genes. Fragments that co-segregate with a mutant phenotype can be extracted from the gel and reamplified, providing access to tagged genes, as demonstrated in a reconstruction experiment. Data on the molecular identification of a phenotypic mutant, isolated in a random tagging experiment is also presented. Upon sequencing, the obtained candidate fragment was found to be identical to part of the previously identified Fbp1 gene.

Entities:  

Year:  1998        PMID: 17655648     DOI: 10.1046/j.1365-313X.1998.00004.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  58 in total

1.  FLOOZY of petunia is a flavin mono-oxygenase-like protein required for the specification of leaf and flower architecture.

Authors:  Rafael Tobeña-Santamaria; Mattijs Bliek; Karin Ljung; Göran Sandberg; Joseph N M Mol; Erik Souer; Ronald Koes
Journal:  Genes Dev       Date:  2002-03-15       Impact factor: 11.361

2.  The MITE family heartbreaker (Hbr): molecular markers in maize.

Authors:  A M Casa; C Brouwer; A Nagel; L Wang; Q Zhang; S Kresovich; S R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

3.  Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize.

Authors:  Q Zhang; J Arbuckle; S R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

4.  Toward the analysis of the petunia MADS box gene family by reverse and forward transposon insertion mutagenesis approaches: B, C, and D floral organ identity functions require SEPALLATA-like MADS box genes in petunia.

Authors:  Michiel Vandenbussche; Jan Zethof; Erik Souer; Ronald Koes; Giovanni B Tornielli; Mario Pezzotti; Silvia Ferrario; Gerco C Angenent; Tom Gerats
Journal:  Plant Cell       Date:  2003-10-23       Impact factor: 11.277

5.  Patterns of Hermes transposition in Drosophila melanogaster.

Authors:  N Guimond; D K Bideshi; A C Pinkerton; P W Atkinson; D A O'Brochta
Journal:  Mol Genet Genomics       Date:  2003-01-25       Impact factor: 3.291

Review 6.  Analysis of plant diversity with retrotransposon-based molecular markers.

Authors:  R Kalendar; A J Flavell; T H N Ellis; T Sjakste; C Moisy; A H Schulman
Journal:  Heredity (Edinb)       Date:  2010-08-04       Impact factor: 3.821

7.  Genomic mutation in lines of Arabidopsis thaliana exposed to ultraviolet-B radiation.

Authors:  Joanna L MacKenzie; Fabienne E Saadé; Quang Hien Le; Thomas E Bureau; Daniel J Schoen
Journal:  Genetics       Date:  2005-07-05       Impact factor: 4.562

8.  Retrotransposon sequence variation in four asexual plant species.

Authors:  T Roderick Docking; Fabienne E Saadé; Miranda C Elliott; Daniel J Schoen
Journal:  J Mol Evol       Date:  2006-03-17       Impact factor: 2.395

Review 9.  Advances in molecular marker techniques and their applications in plant sciences.

Authors:  Milee Agarwal; Neeta Shrivastava; Harish Padh
Journal:  Plant Cell Rep       Date:  2008-02-02       Impact factor: 4.570

10.  Genetic mapping of species boundaries in Louisiana irises using IRRE retrotransposon display markers.

Authors:  Amy Bouck; Ryan Peeler; Michael L Arnold; Susan R Wessler
Journal:  Genetics       Date:  2005-08-03       Impact factor: 4.562

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